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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGgtagtttaccatatttcatttatatcattaaaaaactatatggttgtcattgaatgttatatttggtactatctatataaaaacattatgaaccttttttgtattgtttttggacag

Basic information

species Glycine max
transcript GLYMA15G00590.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGgtagtttaccatatttcatttatatcattaaaaaactatatggttgtcattgaatgttatatttggtactatctatataaaaacattatgaaccttttttgtattgtttttggacag
||| |||||  ||||||||||||| | |||||| || ||||| |||||||||||||||||  | || ||  |||| ||  | ||| | ||  |||| |||||| ||      || || | | | || || |       |||   |    |  | | ||||   || |       ||| |                                      
AGCTTTTGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATCGGTGTTCTTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgta-ttagtttcatctcttgt-tctcgttcacggtgcttatatgtaaggtgaattcttatgaatgtttggtataatacag-------------------------------------

upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGgta-gtttaccatatttcatttatatcattaaaaaactatatggttgtcattgaatgttatatttggtactatctatataaaaacattatgaaccttttttgtattgtttttggacag
||| ||||| || |||||||| ||||| || || |||||||||||||||||||| |||||||| || |||||||| ||  ||||| | || ||||||||||||  |||   |  |||  |||||        |   || |   ||    ||  | || ||| |||||| || | |||||||  |||                                
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgtttatt-------atggcttttaagt--ctataaattggtat-tttggttctttttatataattacag-------------------------------

upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 7
AGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGgtagtttaccatatttcatttatatcattaaaaaactatatggttgtcattgaatgttatatttg-gtactatctatataaaaacattatgaaccttttttgtattgtttttggacag
||||||||||||||||||||||||||| || ||||| |||  |||||||||||| ||||| || || |||||| | ||  |||| ||||||||||||||||||  |    |||| |    |||  |||  |      ||     | | |||||||| | |||||   |  | |  ||  |  || |  |  ||    | |                  
AGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGgtatgtggatatatcttccatattccatgcatctgg-atgcaactattattgaatggtttatttacatcgttttcatgcagtaaaaacagaaagtactgta-----------------