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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCAAGGGAACCAAAGTAATTGTCCAAGTTGTCAAAGAGGACCTTGGTACAAAGGGTCCCACTCTGACTGCTTATCCTAAACTAAAGAGTAGATTCTGGgtatgtgctcttttataattgcaccttcaaaaaagtgtgattgtatatctttcttgtctttcatgtaaattatctataccatgttttgtctgaatcagactctgacctgcag

Basic information

species Glycine max
transcript GLYMA14G36910.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36910.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G04270.2 (Arabidopsis thaliana), 5'ss of exon 5
TCGCAAGGGAACCAAAGTAATTGTCCAAGTTGTCAAAGAGGACCTTGGTACAAAGGGTCCCACTCTGACTGCTTATCCTAAACTAAAGAGTAGATTCTGGgtatgtgctcttttataattgcaccttcaaaaaagtgtgattgtatatctttcttgtctttcatgtaaa--ttatctataccatgttttgtctgaatcagactctgacctgcag
||| || ||||||||| | ||||| |||||||| ||||||| ||| ||||| || ||||| ||||| |||||||| || || || |  ||||||||||||||||| | | | || ||         ||       | || || | |||  ||||  | | | |  ||||  |||||  ||                                  
TCGGAAAGGAACCAAAATTATTGTGCAAGTTGTTAAAGAGGGCCTCGGTACGAAAGGTCCAACTCTTACTGCTTACCCGAAGCTGAGAAGTAGATTCTGGgtatgagatatgttttatcccgttactcttttccatttgtttct-tattattctattttctgaaataaagtttatccttatag-------------------------------

upper sequence: GLYMA14G36910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0057g01320.t01 (Vitis vinifera), 5'ss of exon 5
TCGCAAGGGAACCAAAGTAATTGTCCAAGTTGTCAAAGAGGACCTTGGTACAAAGGGTCCCACTCTGACTGCTTATCCTAAACTAAAGAGTAGATTCTGGgtatgtgctcttttataattgcaccttcaaaaaagtgtgattgtatatctttcttgtctttcatgtaaattatctataccatgttttgtctgaatcagactc-tgacctgcag
||  || || |||||| ||||||| |||||||| |||||||   | |||||||| |||||||| ||||| |||||||| ||| ||| ||| |||||||||||||    |  || ||  |      |||||       | | | | ||||||| |  | |   ||   |||  |  ||| | | |||    |    ||  | | ||   |||||
TCAGAAAGGCACCAAAATAATTGTACAAGTTGTTAAAGAGGGATTGGGTACAAAAGGTCCCACACTGACAGCTTATCCAAAATTAAGGAGCAGATTCTGGgtattcctttcttgatgttcttcttttcaa-------ttagtttctatctttatcatat---ataacaatccttaatatcttatttctctttttgcattcccatggtttgcag