Sequence
atgc intronic sequence ATGC exonic sequenceCAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttccag
Basic information
species | Glycine max |
transcript | GLYMA14G33410.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G33410.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S67_260V6.1 (Physcomitrella patens), 5'ss of exon 6
CAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattg-tgtgttgagatttggttctaaactgatatggagcttttcttccag---
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CAATTTGAAAAGCAAGTTTTGGGGTCGTTCAATCCAACTGGATCCTGTCGGTATTCTCACGTTGAAATTTGATGACGGTGAAGTATTTCAATGGACCAAGgtacgctcttgtttctcaattttgacatgaatcttaactttatcagtcctgaatacgtaaaagttcaaatgtgga-tgacccacgattcttgtgcctacta
upper sequence: GLYMA14G33410.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ08416 (Selaginella moellendorffii), 5'ss of exon 7
CAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttccag
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CAATCTAAAGAGTAAATTTTGGGGGCGTTCAATCCAGCTGGACCCCGTAGGAATTTTAACCTTGGAATTCGATGACGGAGAAGTTTTTCAATGGTCTAAGgtagttcaaacggcatttggattggtctaac-accgtacttgacag---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21285611|gb|BQ473482.1|BQ473482EST: GCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAG GTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCAT
genomic: GCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaa ... tttcttccagGTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG