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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGAGAGGGAATGATCTGGATTTGGCCTGGCAATGATCCACCAACAGCAACACTTCCATCTTTACTACCTCCTTCAGGATTTGAAATCCACGCTGAGgtatgttatgaatataatctgtcccgttaggtattgtgctcgatgcaaaataaaagaattacaattatatgattgattaaaagaaaaagaaacctgtgttttcttatttggtggctcttcacttgttacag

Basic information

species Glycine max
transcript GLYMA14G23860.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G23860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 5
TGAAAGAGAGGGAATGATCTGGATTTGGCCTGGCAATGATCCACCAACAGCAACACTTCCATCTTTACTACCTCCTTCAGGATTTGAAATCCACGCTGAGgtatgttatgaatataatctgtcccgttaggtatt---gtgctcgatgcaaaataaaagaatta-caattatatgattgattaaaagaaaaagaaacctgtgttttcttatttggtggctcttcacttgttacag
 ||   ||||||||||||||||||||||||||||| |||||| |||||||| || ||||| ||||||| ||||||  |||||||| ||||||| ||||||||||||||| |||  | || |  |  |  | | ||    | ||  |     | |    |  |   || || ||| |||  ||    | ||  | |                                        
AGAGCAAGAGGGAATGATCTGGATTTGGCCTGGCAGTGATCCTCCAACAGCCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGgtatgttatcaatgcattcagatctttctgttgtttgaatacttaaaaggcatttttggtctcctcatttctatcattattttttgggaattgcag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7029514|gb|AW459297.1|AW459297
EST:     CAACACTTCCATCTTTACTACCTCCTTCAGGATTTGAAATCCACGCTGAG                         ATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTG
genomic: CAACACTTCCATCTTTACTACCTCCTTCAGGATTTGAAATCCACGCTGAGgtatgttatg ... cttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTG