1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTGCCCTTCTATACATTGTACCTTCTGTTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttcacttcctaatatttaccttttttatgttgtatcaatattaatccatcctttctaatgcatctgatttgtacacaatttcttgtgttgaagt...
species | Glycine max |
transcript | GLYMA14G21190.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|192297521|gb|FG992719.1|FG992719
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|22928542|gb|BU545681.1|BU545681
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|14008812|gb|BG725416.1|BG725416
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|193550895|gb|FK509318.1|FK509318
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|22928857|gb|BU545996.1|BU545996
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|192301904|gb|FG995522.1|FG995522
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|26058470|gb|CA801384.1|CA801384
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTEST: gi|7693245|gb|AW761340.1|AW761340
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAEST: gi|4287540|gb|AI441204.1|AI441204
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGA
EST: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCCCTTCTATACATTGTACCTTCTGTTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttcacttcctaatatttaccttttttatgttgtatcaatattaatccatcctttctaatgcatctgatttgtacacaatttcttgtgttgaagt
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT