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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatatattgtacaatggcctgttaaactttcttaccctttttattgtaacagaatatcttatttgaaatacttttctattttattatag

Basic information

species Glycine max
transcript GLYMA14G14360.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatatattgtacaatggcctgttaaactttcttaccctttttattgtaacagaat-atctta--tttgaaatacttttctattttattatag
| ||| |||||||||| |||||||| ||||| ||||||||||| ||||   |||| |        ||| ||||||  |  ||| ||   |    |||  | || | |   ||||   || | || || | |  ||  |||  ||
GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgta---ttattt------tgatgacctgtttcatattcataatatccagattaaaccatatttgccttagcattcatatcctatccatttggattccag

upper sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatatattgtacaatggcctgttaaac----tttcttacc-ctttttattgtaacagaatatcttatttgaa---atacttttctattttattatag
| ||| ||||||| ||||||||||||||||| ||||||||||||||||   || |   |       |  | | |  |||    ||| |||   || || |||  |||    ||| |  |  ||    ||||   |||  |  |||| ||
GAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATGgtattattctgattgcccttttttcttctcgaacactgttttttattgctcttaatttcaacttcttatatcttaagatcttatacccctcttctggattacag

upper sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatatattgtacaatggcctgttaaactttctt---acccttttta--ttgtaacagaatatcttatttgaaatacttttctattttattatag------
| ||| ||||||| || |||||||||||||| ||||||||||||||||   || |   |       |  | | || |||  | ||   |    | |||  ||   |   ||  |||||| |   | | | || |||  | ||          
GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATGgtatcattttgattgcccttttttcttcttgaacactattttgattgctcttaacttcagatcaaacttcttatgtcttaaaatcttatatcctgtttggatttcag

upper sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 6
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatatattgta-----caatggcctgttaaactttcttaccctttttattgtaacagaatat-------cttatttgaa----atacttttcta-----ttttattatag-----------------------
||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| | |||  |        |   |  ||| || | || |   ||||  | | |  |  |  |        |||||||||    |||| |||  |     | |||||| |                        
GGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTAATGgtaagcttaaaaattccaactgcttgtattcctttagacatgctgattattttcttggcagaattacttaatggggtttatttgaatgctataccttttcagaaaatcttattacatcttttttttttctttttttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405594|gb|EV275408.1|EV275408
EST:     GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTT
genomic: GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTT
EST: gi|254346686|gb|GR856408.1|GR856408
EST:     GTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT