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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaagatagttgtaggtttttttgtaatttgaatctgttcaatgttttgccttggatagtgtgagtggacaggaaacacttaattcaatttggttt...

Basic information

species Glycine max
transcript GLYMA14G14000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 5
---------------------------TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaagatagttgtaggtttttttgtaatttgaatctgttcaatgttttgccttggatagtgtgagtggacaggaaacacttaattcaatttggttt--------------------------------------------------------
                           ||| ||||||||||||||||| || || |||||||| || ||||||||    |||||||| ||| |||||||||||||  |  || | |||  | || || |   |||  ||  |   | ||| |     | | ||   || |    ||   | || |   |   ||   |                                                          
ATTATGTATACCTTTTTGGACCTGCAGTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaag-gacctattagtacctcttattctcgattg--tccttcacaagttgtagtacgca-agcaagacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatag

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G000393_T01 (Zea mays), 5'ss of exon 6
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaagatagttgtaggtttttttgtaatttgaatctgttcaatgttttgccttggatagtgtgagtggacaggaaacacttaattcaatttggttt-----------------------------------------------------------------------------
||| ||||||||||||||||| || || |||||||| || ||||||||    |||||||| ||| |||||||||||||  |  || | |||  | || || |   |||  ||  |   | ||| |     | | ||   || |    ||   | || |   |   ||   |                                                                               
TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaag-gacctattagtacctcttattctcgattg--tccttcacaagttgtagtacgca-agcaagacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatagtaagcattttggattgggcag

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaagata-gttgtaggtttttttgtaatttg--aatctgttcaatgttt--tgccttggatagtgtgagtggacaggaaacacttaattcaatttggttt-------------------------------
| | ||||||||||||||||||||||| || || |||||||||||||   ||| ||| |||||  ||||||||||||| ||   |  |   | | |||    |  |||   |  ||| |  || |||  | | |    |    |  |   |||       | | |||  || |   ||                               
TCCAAATCGAGGTGATAGCTTAGATCGAAAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTgtaagtaaacaatatcaaaagctttagcatcctttagtagcctgcttgatatttgcttcttctacttagttttgcacacacagttttcctcatt-gatgtaccttctaatatcttctggcactactgctttttcag

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaag-atag---ttgtaggtttttttgtaatttgaatctgttcaatgttttgccttgg-atagtgtg-agtggacaggaaacacttaattcaatttggttt-----
|||||| |||||||||||| ||||| | || |||||||| ||||||||  |||| || || ||  ||||||||||||| ||| |||    || |   | ||||  |    |  || | |  | |  ||  |  ||   | |  |  | |  |||     | ||  |   |   ||| ||     
TGCTAACCGAGGTGATAGCCTAGATAGAAAAATTGACGAAGAAAATCGTGCAACTAAAGACTTTTTGATTCTTgtaagtaaggataactcttttgcttcttttcattgccttcatatatgaatttcttctcactgatgtggcttccaatctacatttttctctcgaaatatgatggattattag

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 6
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaagatagttgtaggtttttttgtaatttgaatctgttcaatgttttgccttggatagtgtgagtggacaggaaacacttaattcaatttggttt----
|||||||||||||||||||||||||||||||||||| | ||||||||||   |||||||||||| |||||||||||||  |  | | | |  || ||     |||   ||    |||| | |||||  ||   |    ||||| |||| |   |    | ||  || |         
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTTgtaagtta--tggatttcagtgttaccaaaatc--aactatttcattattttgttttcttttacatgagtagacatgttgccaaaatttttatcttagaaagag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532999|gb|EH261132.1|EH261132
EST:     ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT                         GAAGGTCATGAGGAAGCTCAAGAAGAGTTGCC
genomic: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaaga ... attatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCC
EST: gi|120533853|gb|EH261986.1|EH261986
EST:     ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT                         GAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTC
genomic: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaaga ... attatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTC
EST: gi|26056275|gb|CA799189.1|CA799189
EST:     ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT                         GAAGGCCATGAGGAAGCTCAAGAAGAGTTGCGTAAAAAGGTTAAA
genomic: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaaga ... attatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAA