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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATCAATATCTCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTAAGTATACTGAGgtgaggaaaaatactaatatattgtttttcctttgtaactattaattacgtacaaaattacatttgtcactgctatttgaagcaaaatgaattgactatggggttgacatttgaagccatctcacgtttcttcaataatcattcaaatctttgtaatgcag

Basic information

species Glycine max
transcript GLYMA14G12420.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 11
GGAAATCAATATCTCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTAAGTATACTGAGgtgaggaaaaatactaatatattgtttttcctttgtaactattaattacgtacaaaattacatttgtcactgctatttgaagcaaaatgaattgactatggggttgacatttgaagccatctcacgtttcttcaataatcattcaaatctttgtaatgcag
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GGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTTTTGAGTATACAGAGgtaaagt--------------ttacttttccttaata--tgttatggtggtggcagacttctttgcttacatattttcaaagtgcag--------------------------------------------------------------------------