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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttttttattttctctatgcccattgtttatactattctgtcagtgtgtcttttttataatgtgaagtacttagctgactatattatactctctg...

Basic information

species Glycine max
transcript GLYMA14G08860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 7
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttttttattttctctatgcccattgtttatactattctgtcagtgtgtcttttttataatgtgaagtacttagctgactatattatactctctg
 |||||  |||||||||| ||||| |||||||||||| | ||||| |||||| | |||||||| || ||||||||||| |||||||||||| ||    |  |    |  |  |   ||  | |     |  | | | | ||  | ||   |         | |||| ||    |  | ||  || |  
GACATCAACTGATTTATTTAAAACCGTTTTTGACCTCATGGTATCTGTGACTCTTTTCGTTGGTCGGTTTGACATGCGGATGATGCAGgtatgtgacctgttgaagttgaaacttgttcctcacttcctctttttattttggttgttagttttcagcttttccttatctcgtgaagtcatgatcccct

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 3
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagt--ttttttattttctctat-gcccattgtttatactatt-ctgtcag------tgtgtcttttttataatgtgaagtacttagctg-actatattatactctctg----------------------------------------
 |||||  |||||||||| ||||| || ||||||||| |  |||| |||||| | || ||||| || ||||||||||||||||||||||||  |   |||||   | | | || |  | ||  ||  |   || |||   |      | ||  ||| ||    |   | | || || | | |||   ||||    |                                           
GACATCAACTGATTTATTTAAAACTGTCTTTGACCTCATGATATCTGTGACTCTGTTTGTTGGTCGATTTGACATGCGTATGATGCAGgtacatcactttttccctccgccatagtgcctttattgcatggtttctgcttgattccttatgcatttctttccgttataggcacataacagtactgatttatgtattgcactacaaagttattaacagtttttttactaaccttgaccag

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 7
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttt-----tttattttctctatgcccattgtt-tatactattctgtcagtgtgtcttttttataatgtgaagtacttagctgactatattatactctctg
 ||||| |||||||||||||| || |  ||||| ||  | || || |||||| | || |||||||| ||||||||||| ||||||||||| | |||      |  |  ||   |||   |||  ||  | | | || |||||  || |  ||||| | |    ||||||||     |   |  | ||       
GACATCAGCTGATTTATTCAAGACAGCATTTGATCTTATGGTCTCTGTGACTCTTTTTGTTGGGCGATTTGACATGCGCATGATGCAGgtcaatttcctatctccagctttattatctgcatatttgcacatttttgtgtcaaagtattctttttctca----aagtactttctacatccttctgtag------

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 7
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttttttattttctc-tatgcccattgtttatacta--ttctgtcagtgtgtcttttttataatgtgaagtacttagctgactatattatactctctg------------
|||||| |||||||| || ||||| || ||||||||||| || |||||||| || ||  |||| || ||||||||||| ||| ||||||||    |||| | ||| |  ||||  ||  ||  || | |  |||||    |     |||    ||||     | | |||  |     |  | | |  | ||            
AACATCGGCTGATTTGTTTAAAACCGTGTTTGACCTCCTCGTGTCAGTGACAGTATTTCTTGGCCGCTTTGACATGCGGATGCTGCAGgtataccttttaaatttatgatatgatcag-gtccattccactttctggagatagacatttacggtaat----tgcatttaatttttgctgctttcccttgtgccaaatctttag

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 6
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttttttattttctctatgcccattgtttatactattctgtcagtg-tgtcttttttataatgtgaagtactt--agctgactatattatactctctg---
||| || |||||||| || ||||| || ||||||||||| |||||||||||||||||  |||| || ||||||||||| ||||||||||||   | |||  || |    |||      | |   |   || | ||  |  ||  ||  |||| || |    |  ||  | ||  |   ||| |    | ||   
AACTTCAGCTGATTTGTTTAAAACTGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGgtatactatttc-ttatactgatgtgataggatctgatccttttatctttcctgatttgcttattatattgcttttttgtaactttccccatttttaaatgtgtag

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 7
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagtttttttattttctc-tatgcccattgtttatactattctgtcagtgtgtcttttttataatgtgaagtacttagctgactatattatactctctg
|||||| |||||| | || || || | |||||||||||| |||||||| ||||| || ||||| || ||||||||||| ||||||||||||   ||    ||| | |   ||     ||||| | | |||  ||||  | | ||||||  |||    |||  |||   ||  ||   |    ||  || 
AACATCAGCTGATCTTTTTAAGACAGCTTTTGACCTCCTGGTATCAGTAACTGTGTTTGTTGGTCGCTTTGACATGCGCATGATGCAGgtacaattccacattcttttgcatcatggttgttaacattatggtgtccttttttcttttaaatagcaagaatcactct-ctttctccctctctctgcctc

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S147_29V6.1 (Physcomitrella patens), 5'ss of exon 6
AACATCTGCTGATTTATTCAAAACGGTTTTTGACCTCCTAGTATCAGTGACTGTCTTCGTTGGGCGTTTTGACATGCGTATGATGCAGgtaagt---ttttttattttctctatgcccattgtttatactattctgtcagtgtgtcttttttataatgtga-agtacttagctgactatattatactctctg
 |||||||| |||||||||||||| |  ||||| ||| |||| || |||||| | ||| |||| || |||||||||||||  ||||| || ||          |   |||        | | |  || |||| |  |   |     |  ||||  |  ||| | |  ||   |||  | |  | | | |   
GACATCTGCAGATTTATTCAAAACTGCATTTGATCTCTTAGTTTCTGTGACTTTGTTCCTTGGCCGCTTTGACATGCGTACCATGCAAgtgagcaaacacaccacactcttggcataaactttcaattctatacattttttaaaattagtttaataaatgacaatttttttttgaaga-acaacaattt---