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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtgcgtgccaattatttgatcttttattctttctgttttagagttttataggctttcaataaaataattatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttccattag

Basic information

species Glycine max
transcript GLYMA14G07850.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G171354_T04 (Zea mays), 5'ss of exon 1
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtgcgtgccaatta---tttgatcttttattctttctgttttagagttttataggctttcaataaaataattatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttccattag
  |||  | |||||||||  ||||||||||||| |||||   ||| || |||||||| ||||| || ||||||||||||||||||||  | |||||| ||||  ||  | | |        | |       |||| |  || | |   ||      | || |    ||  |||| ||||  ||                                                       
TCTATACCAAATGTTTATTGTCAATGCTGGTCCGGGTTTCCGGCTACTATGGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttccactgaggcacaagcgacagaacttttttcttgataacattgcttaatgtctaaggtattcttatgtttt-tag-------------------------------------------------------

upper sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtgcgtgccaattatttgatcttttattctttctgttttagagttttataggctttcaataaaataattatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttccattag
| |    || |||||||| |||||||| ||| | ||||||||||| ||||||  |||||||||||| ||||||||||| || |||   || || ||| ||||       | |||   |   ||||  |   ||  ||||     ||||| |  |   | |||| |   ||| |  |    | |  | ||                                              
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta------acttagccgtggtttttatgcatccatttttacactttattgtatagaactaaactg--tat-taatgtgatctgaatag----------------------------------------------

upper sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 6
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtgcgtgccaattatttgatcttttattctttctgttttagagttttataggctttcaataaaata-attatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttccattag
| | || | ||||||||| || ||||||||||| ||||||| |||||| |||||||| |||||  | ||||||||||| ||||| ||||| |||||  ||||  ||   ||  | ||    ||||| ||| | |    ||   | |    |  | | |  |   || | | |  | |    |||||    |  |   ||   || || | |||||| |  |  ||  || | | ||
ACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATgtaagttaaaagaagtta---ttttaatctgtttagagtatgatctccctgtttgttagaagtgtacactgtgctgttttctttacttctaacagaagtca-ta-aggagtgattgtttttggaaattttcctcag