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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGgtagattcttgaatgaagtttctttcatatattaaaatggaatatggttctgagtctccattttgtttgttaag

Basic information

species Glycine max
transcript GLYMA14G07750.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07750.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 6
GTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGgtagattcttgaat-----gaagtttct-ttcatatattaaaatggaatatggttctgagtctccatt------------ttgtttgttaag
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||    |||| ||     ||| | | | ||| | | ||| |||  |      | |  |||   | ||            || ||| | |||
GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgcttttatttttcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278601|gb|BI942988.1|BI942988
EST:     AAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAG                         CCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTC
genomic: AAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGgtagattctt ... gtttgttaagCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTC
EST: gi|24205453|gb|BU964706.1|BU964706
EST:     AAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAG                         CCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTC
genomic: AAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGgtagattctt ... gtttgttaagCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTC
EST: gi|57574105|gb|CX547080.1|CX547080
EST:     AAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAG                         CCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTC
genomic: AAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGgtagattctt ... gtttgttaagCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTC