1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctcttgattttgatttctttttttggttttattctgctcattttggtattgctattattctacactatgatgccaagaggtttttactaatat...
species | Glycine max |
transcript | GLYMA14G06780.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|208124750|gb|GD924196.1|GD924196
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|208079688|gb|GD875820.1|GD875820
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193359542|gb|FK324599.1|FK324599
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193378276|gb|FK345023.1|FK345023
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193414756|gb|FK381396.1|FK381396
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193368600|gb|FK337570.1|FK337570
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCGCGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAEST: gi|208303520|gb|GE101265.1|GE101265
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTA
EST: ATGGAGGTCTGTCACATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTGTAGGTATAGGTEST: gi|193513684|gb|FK466458.1|FK466458
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|208253117|gb|GE051567.1|GE051567
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|151409195|gb|EV279003.1|EV279003
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGGCTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193394863|gb|FK359036.1|FK359036
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|208100430|gb|GD898502.1|GD898502
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193386958|gb|FK351255.1|FK351255
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|193433145|gb|FK395783.1|FK395783
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|208311176|gb|GE103414.1|GE103414
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|21285329|gb|BQ473200.1|BQ473200
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGEST: gi|207790508|gb|GD760889.1|GD760889
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGG
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|13562572|gb|BG550792.1|BG550792
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTEST: gi|208231945|gb|GE031320.1|GE031320
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCACATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTGTAGGTATAGGTEST: gi|51335938|gb|CO979804.1|CO979804
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAG AGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTGTAGGTATAGGTEST: gi|16276249|gb|BI941758.1|BI941758
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGT
EST: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATGTCACGTTGGCAG AAGGACTTGACTGATTCAACTGTCTTAACGAACATGAGTATAGATATA
genomic: ATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctc ... ttttgtgtagAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGgcaagacctcttgattttgatttctttttttggttttattctgctcattttggtattgctattattctacactatgatgccaagaggtttttactaatat
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG