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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGgtaccattggtgctttttttgtttgtttcctaaatttgaatgacattcaacttcaacattaacaaaactttttaagcttactgatatctgatgtttaata...

Basic information

species Glycine max
transcript GLYMA14G05810.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05810.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g39270.1 (Oryza sativa), 5'ss of exon 6
TGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGgtaccattggtgctttttttgtttgtttcctaaatttgaatgacattcaacttcaacattaacaaaacttttta---agcttactgatatc-tgatgtttaata---------------------------------------------------------------------------------
 |||||||| || ||| | ||||||||||| || ||||||||||| ||||| || ||| | || ||||||||| |||| ||  || ||||  | ||||||||     ||     ||| |  | |||||   |  |   |   || | |||||     ||        ||||  |   |   ||||  | |    |  |  |||                                                                                  
AGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgt-tagctgagttatttgtgatatgttttacatgtcaaagc-acttccaactctcttatgttagctgctttggagtcattctactagtgttgcaacttccaattcattttcttcttccaagtaaatcaaatgcaacctcaatattcaaattttgatttaataaacaagctaaatgtgttctgaag

upper sequence: GLYMA14G05810.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0057g01240.t01 (Vitis vinifera), 5'ss of exon 6
TGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGgtaccattggtgctttttttgtttgtttcctaaatttgaatgacattcaacttcaacattaac-aaaactttttaagcttactgatatctgat-gtttaata
 ||||||||| | ||| |||||||||||||||| |||||||||||||||| |||||||| |||||| |||||  | || || ||| | || ||||||||||||  | || | ||| | |   ||  ||  ||  |    |     |  ||   |  ||  |||  ||| | | | |  | |   |||| || |   ||||| 
GGCAGATGCAATTCTTCTAATTGCTGCTGTTTTACCTGATCTTGACATCAGATACATGACTAAGATTTGCAAGATGCTTGGGTTGGCAGCACTTGTTGAGgtatgaatgctacttctgt--cttagttgttatttccataatgagtctaatgactgcagaaactgaaaatgtatgaaatgaaacatatttgtttagttaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496950|gb|EH225117.1|EH225117
EST:     AATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAG                         GTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGCGGATTGAG
genomic: AATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGgtaccattgg ... ttactcacagGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAG
EST: gi|208265639|gb|GE063167.1|GE063167
EST:     AATACATGATTAAGATATGCAGATTACTCGGATTGACTGCGCTTGTTGAG                         GTTCATGATGAGAGGGAATTTGA
genomic: AATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGgtaccattgg ... ttactcacagGTTCATGATGAGAGGGAATTTGA
EST: gi|208136573|gb|GD934171.1|GD934171
EST:     AATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAG                         GTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAG
genomic: AATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGgtaccattgg ... ttactcacagGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAG