1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATCAATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctgcactgctgtctgacccctctctcccctggcccctttattttctaatttattttgattttacgccgaacgaatttgctgctgcagctgcttactgtttaaacaaaaatttgaatcctgtag
species | Glycine max |
transcript | GLYMA14G05490.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAAEST: gi|208169785|gb|GD967396.1|GD967396
genomic: CAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAAC-A
EST: GACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACACEST: gi|193521068|gb|FK478121.1|FK478121
genomic: GACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
EST: CAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACACEST: gi|9203748|gb|BE329972.1|BE329972
genomic: CAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
EST: ATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACACEST: gi|6951761|gb|AW423829.1|AW423829
genomic: ATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
EST: ATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACACEST: gi|193489656|gb|FK456769.1|FK456769
genomic: ATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
EST: TACACACAGTGAAGAGCAG ATGAAAGC-ATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAAEST: gi|19269212|gb|BM885468.1|BM885468
genomic: TACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAAC-A
EST: ATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACACEST: gi|193695446|gb|FK632070.1|FK632070
genomic: ATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
EST: CAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAG ATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
genomic: CAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctg ... aatcctgtagATGAAAGCTATTCTATCCGATGCCATTAAATGTAACCAAGAAGAAAAACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATCAATACATCAATAGAAAATTCAAAGACGAGGATTACACACAGTGAAGAGCAGgtcaaacctgcactgctgtctgacccctctctcccctggcccctttattttctaatttattttgattttacgccgaacgaatttgctgctgcagctgcttactgtttaaacaaaaatttgaatcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG