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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgttgaaatttctcagaacacttggtattcatctcttgcattttgatgttttttatcatggcttttttataaaaaaaactaatcaatgttttt...

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 6
CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgttgaaatttctcagaacacttggtattcatctcttgcattttgatgttttttatcatggcttttttataaaaaaaactaatcaatgttttt-
 ||  | ||||| || |||||| |  ||||||||||||||||||||||||| || || || ||||||||| |||  |     || |  |   |   | ||  ||  |  |   |    |     | | ||      | |  | | | |    |||   ||    || 
TCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAACATTGTATCAAGgtgaattttctattccttgttcgttgatcagataa-cagatgataggtaccaaaagaatgtctccgaatatatcaaaatagacccttaagtgattaagttt

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 6
CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgttgaaatttctcagaacacttggtattcatctcttgcattttgatgttttttatcatggcttttttataaaaaaaactaatca-atgttttt-
 ||| |||  |||||||| ||||| |||||||||||| | ||||| || || ||||| || |||||||||| |  |     || |  |     |||| |  | |    |   | ||||    | |   |   |   || |  |  |||| | |  ||| |||   |  
TCGACTGAAGGTCATTGCTGAACTCAGGCATGGGGATCTTTTTCACTCCGCCAATATTGTATCAAGgtgagatgat--gtcttgcatattctgcttgctccttaaggttcagaatttgggactatgagttgagttgttctactggaaaagattgctcagatgacataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522003|gb|BU080814.1|BU080814
EST:     GCAGAACTAAGACATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG                         CATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
EST: gi|105633923|gb|DW247286.1|DW247286
EST:     GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG                         CATAGAGCTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
EST: gi|7042199|gb|AW472102.1|AW472102
EST:     GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG                         CATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
EST: gi|151403867|gb|EV273677.1|EV273677
EST:     GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG                         CATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG