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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTGgtgggtcaagtcattgcagtttgaaatatattgtcactcatttattgtgttatttgtggaatcattgtgaattgcatatcatgtttaagtatatagaaatctcatccgtgccatcttgggcttgctaactgaaatggtctttctgcag

Basic information

species Glycine max
transcript GLYMA14G03520.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03520.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 5'ss of exon 6
GTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTGgtgggtcaagtcattgcagt--------ttga---aatatattgtcactca---tttattgtgttatttgtggaatca--ttgtgaattgcatatcatgt---ttaagtatatagaa-atctcatccgtgcca--tcttgggcttgctaactgaaatggt---ctttctgcag
|||||||||||  ||||||||||||| |||   ||| ||| |||| |||||||||||||| ||| |||||||||||||| || || ||| |  | |        ||||   ||||| || ||  | |   ||| |||| |  |||||   ||||  || || |   ||| |   |    | |   || |||   |  | ||  ||      || | | | |  | ||| ||||       |||||||||
GTATCTTGATGTTGCTGGAATGAAGAGGTCCGGAGCATATGTCATGAATGGGGTTGTGATTTTCTTTGCTTGGCTGgtgagtaaaatcaatttactattatttgttgatttaatatcttctcttttaatttttgttgtttactttgtatgatcaagttatggaaaccatttttcgcaaatcagacatgtagcttacattattagtctttattccttgacctaattactaaaatataatgttttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098376|gb|HO760117.1|HO760117
EST:     AGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTG                         GTTGCCAGAATACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCAC
genomic: AGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTGgtgggtcaag ... ctttctgcagGTTGCCAGAATACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCAC