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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGATACAAAAGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGTTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatcttgttttaaaccaatttggttcaataaaatattttatttggatgaattaaacttgatttttatttgcttcatttttctgagctac...

Basic information

species Glycine max
transcript GLYMA14G02480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02480.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGATGATACAAAAGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGTTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatcttgttttaaaccaatttggttcaataaaatattttatttggatgaattaaa---cttgatttttattt--gcttcatttttctgagctac
|||||||||||| | || || || |||||||||||||| || ||||||||  ||||||| || |  ||||||||||| |||||  |||||||||| |||||| |  | || |    ||| |    ||    |  |||   ||  || |||   |   || |    ||| |  ||  |||  | | ||  ||| | ||    
GTTGATGATACAGAGGTCATTAGCTTCCTTCTTTCAACTGAAATTATTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAgtaagtcttttaatttaccgttacatt--ttcatgttcatatggtaccttctttaagtttcttgacagtcttaaaattcgttttagatgcacatttgttagt---

upper sequence: GLYMA14G02480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 8
GTTGATGATACAAAAGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGTTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatcttgttttaaaccaatttg-gttcaataaaatattttatttggatgaattaaacttgatttttatttgcttcatttttctgagctac
|||||||||||| ||||||| ||||||||||| |||||||| || |||||| ||||||| ||||  ||||| ||||| ||||||||||||||||| ||||||   | ||| || |  |   | || ||  |     |  | |||||| | |   |   |    |   |   | ||||  ||         ||  |  
GTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCGCTGTGCCTACGCACCATGGAGATGGGGAGTGAATTGTCAAAAACAgtaagtgcccagattttataattctctaacttatgaagcttgtactattttctctcactacctgttgcaaaaacatcatttttttaggaagatagaaatg-