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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttatggtctttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag

Basic information

species Glycine max
transcript GLYMA14G01480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacc--------cctttcttgttatttatggtctt------tatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcat-cacgataattg---cttcgatgcag-----------
 || ||||| || || || || ||||||||||| ||||||||||| |||||  | |||||| || | || ||||| |||||||||||| |||||| |||||||||        || |   |||| |  |   | ||      ||  ||  ||    | |     | || |||   | |    |||   || |    ||||| |   |   ||| | |||  |  |  ||||    | | |||| |           
TGCGATTGACTTAATCGTTCAGCATATTCGCACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacctgatgtaaccataaatgttctgcagtcttttcttatataagaacaattgtctgtcttttgatagtctcataatattgaatgtaatatgcactttttcag-gatttttgtaacatatataaatattgacattgcaatgctgctttctttcag

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttc-----ttgttat-ttatggtctttatcaatcatccca--tcttccccgttaatctggaacttccaaatt------cgatttttttt---tttttat------taaaagttgaatcatcacgataattgcttcgatgcag
 || ||||| || || || || |||||||| || ||||||||||| |||||  | |||||| || | || ||||| |||||||||||| |||||| ||||||||  | |       |   | |  |   || |||    || |  ||   | ||    | ||||||   | |    |||       | ||| ||| |   ||||| |      || || |   | |||  | ||  ||  |||  | |||
TGCAATTGACTTAATAGTTCAGCATATTCGTACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatgtgaccataaatgtgctgcagttttttcttataaaaccgattgttttttgataatctcataatattgaatgttaatgcaattatttctggatttttgtagcgtatataaatattagcatttcaattcttctttcttt-cag

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttatggtctttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag
||| |||||| | ||||| ||||||||||| || || ||||| ||||||||  | || |||||| | || ||||| ||||| |||||| |||||| |||||||||   |       ||| ||  |  || |   | |     | ||  | |||    || ||      || |  |      ||  |  ||  |     | |||||                      
GGCAATTGATCTAATTGTTCAACATATTCGGACTAAACTTGGACAGCATGATCTTTGCAAAATACACCCCAATTTGTATGTAATTCAGACTACTTATCAGgtacctaatgtaaaacattcatttttatttttc-tgaaaatttgtttgctgtttgattgtaaacggagaactgtagaggcattgatgcatagag----gcatcat----------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttatggtct--ttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag
 ||||||||||||||||| ||||| || |  |||||||| ||||| |||||  | |||||||| ||||| ||| | ||||| ||||| || |||||||||||    |||  |     ||| | ||||  | | |||  |||  || |||    ||| ||    ||    ||    |||  |||      |  |   ||                               
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttttacttattccccttttctcgtctactcaacaacaatc--attttcttgtttagtc----acccaaaagactgatcctttggccgctgcttgcag-------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttatggtctttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag
 |||||||| || ||||| ||||||||| |||| ||||| ||||| |||||  | |||||||||||||||||| | || || || || || || |||||||||     |   |   || |    |   ||  | | |     ||||  |    || |  || |    ||||| ||||| | ||                                            
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatat-caatctcatctacatacgagtaacattctcttaactaccaaacaagatccagaaaatt-gatttctcttgcag----------------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccct-ttcttgttatttatggtctttatcaatcatcc-catct-tccccgttaatctg---gaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgata--attgcttcgatg--cag--------------------------------------------------------------
 || |||||||||||||| ||||||||||| || || ||||| || |||||  | |||||||||||||||||| | ||||||||||| || ||||||||||||   |   ||||  |||||    |  ||||  |   |     | | | || ||   | ||   |   ||  |||||| |  |||  | |  |  |||| ||    ||| || |||    | | ||||||   |||                                                              
AGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGgtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtca-catgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccag

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S19_94V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttat-ttatggtctttatc--aatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag
|||||||||| | || || || |||||||||| ||| |||||||| |||||  |  | ||||||||||| ||| ||| ||| || ||||| ||||||||||||     |  || |||| | |     || ||   ||| ||      |    ||    ||| ||| || | | |    ||  |    || | ||   |||  |                           
GGCTATTGATCTTATAGTTCAGCATATTCGCATGAAACTTGGTCAACATGATCTCCGCAAAATATATCCGAATGTATTTGTTATCCAGTCCACTTTTCAGgtattgtctaattcttatatcagcagtttcatgggaatgataagtcgtcattcgaagttctcgaagtttccagt---gttcctcacattgttttgtgagtgaa---------------------------