1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATTTCTGTGGGCATTTTATGGTGGTCAACAAGAAAGCTGGAGATACATCCTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAGgtcttaatttcaatttccagttttatatactttataataattatcattttgtattgttgtttctagctagctctctgcctgtcaatatattgcctccttt...
species | Glycine max |
transcript | GLYMA14G01420.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAG GTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGCEST: gi|58017583|gb|CX704325.1|CX704325
genomic: CTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAGgtcttaattt ... atggtttcagGTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGC
EST: CTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAG GTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGCEST: gi|58021424|gb|CX708165.1|CX708165
genomic: CTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAGgtcttaattt ... atggtttcagGTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGC
EST: CTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAG GTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGCC
genomic: CTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAGgtcttaattt ... atggtttcagGTCACCTTAGGAATTTCAACGCTTCTTTCATATGTACCTGTTTCACTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTCTGTGGGCATTTTATGGTGGTCAACAAGAAAGCTGGAGATACATCCTGCAGTACGATCTGTGATTGGAGGTGCTGTTGGCATGGCAGCTCTTCAGgtcttaatttcaatttccagttttatatactttataataattatcattttgtattgttgtttctagctagctctctgcctgtcaatatattgcctccttt
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctt