1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCATCTCCAATCTACACCCAACCACGATATTTGCCTCCCTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcatttcagaaccttcacattctactgatctgctctgtacatgagatttatacaattcttaacaaagatgtcaaatataatgagattaatttatttataggaaactaaccttgtattccatactttgtgccatag
species | Glycine max |
transcript | GLYMA14G01290.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGNCTGCGATCTTGCATATCAGAAEST: gi|209712746|gb|BW681600.1|BW681600
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: AAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|31472397|gb|CD414425.1|CD414425
genomic: AAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGTTGAAGAATGTGTGATTAAG AACTGCGAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|22522873|gb|BU081684.1|BU081684
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|15287005|gb|BI470896.1|BI470896
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|10238679|gb|BE807567.1|BE807567
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|17518996|gb|BM188038.1|BM188038
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|31468241|gb|CD410269.1|CD410269
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGNTTGGGCTGCGATCTTGCATATCAGAAEST: gi|31461779|gb|CD403807.1|CD403807
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: ATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|192295337|gb|FG985991.1|FG985991
genomic: ATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: GGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|51335512|gb|CO979378.1|CO979378
genomic: GGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|10232477|gb|BE801365.1|BE801365
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|5770728|gb|AI973902.1|AI973902
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|7640498|gb|AW734799.1|AW734799
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAEST: gi|22929307|gb|BU546446.1|BU546446
genomic: TTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
EST: ATGTGTGATTAAG AACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
genomic: ATGTGTGATTAAGgtaagcattt ... tgtgccatagAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATCTCCAATCTACACCCAACCACGATATTTGCCTCCCTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGgtaagcatttcagaaccttcacattctactgatctgctctgtacatgagatttatacaattcttaacaaagatgtcaaatataatgagattaatttatttataggaaactaaccttgtattccatactttgtgccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG