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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAGgtgcaattctgcacttgtttgacattgtaaactattgtagctttgctatgtgcacgccaattattttgagatgcttctgcattgttattcatgcag

Basic information

species Glycine max
transcript GLYMA14G00540.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 8
GTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAGgtgcaattctgcacttgtttgacattgtaa----------actattgtagctttgctat-----gtgcacgccaattattttgagatgcttctgcattgttattcatgcag-------------------------
 |||||||||||||||||||||||| |||| || ||||| || || ||   |||||| || |||||  | || | |  |||||| |||   ||  | |||||   |  ||| | |  ||   | || | |          | | || ||   || | |       || |   || | ||  |  | |  || | |||| |  ||| || |                          
ATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggctgtattatttcttctttatcatgagaccttcaatgttctaaaattaccacttttcatgtagttcattcatcctctgctcgttat-cattttccttcttgaaacatctgcatggttattgtttcacag

upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 8
GTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAGgtgcaattctgcacttgtttgacattgtaaactattgtagctttgctatgtgcacgccaat-tattttgagatgcttctgcattgttattcatgcag-------------
 ||||| |||||||||||||||||||| |||||||||||||| || |||  |||||||||||||||||| ||||  || |||||||||   ||||| |||||   |||    |  | ||   || || ||| |||  |      ||| ||   | || ||  | | |    ||   | | || | | | ||||  |              
ATGGACCCAACAGATGAGAGATATGCTAGAAGCAAGGAAGCGTGGGGACTTTGCATTCCGTGACAAGGATTTTAAAACTGCCATTGATTGTTATTCTCAGgtatgatttc-tatctcttc--caatggaaagtatgat------gctgtgcaaatgctaaggtgtatctccataggt-tacactataagtcataaaaggcaaaaggggta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724974|gb|AW309373.1|AW309373
EST:     ATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACAATGGTCTCCCCAACTGTGTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAGgtgcaattct ... attcatgcagTTTATTGATGTTGGAACAATGGTCTCCCCAACTGTGTTTGCAAGGCGCAGT
EST: gi|51341542|gb|CO982859.1|CO982859
EST:     ATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACAATGGTCTCCCCAACTGTGTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAGgtgcaattct ... attcatgcagTTTATTGATGTTGGAACAATGGTCTCCCCAACTGTGTTTGCAAGGCGCAGT
EST: gi|15814119|gb|BI786394.1|BI786394
EST:     ATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACAATGGTCTCCCCAACTGTGTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAGGACAGCCATTGATAACTATTCCCAGgtgcaattct ... attcatgcagTTTATTGATGTTGGAACAATGGTCTCCCCAACTGTGTTTGCAAGGCGCAGT