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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAACATGAATTAACTCAATGGGAGGCAATTATCTGGCTTGCTATCTTGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctatatcattttcagaatttcttgatcattaatttctattgttgtaccactagagcttctattctcgtggattgttgaatttgagcctttatat...

Basic information

species Glycine max
transcript GLYMA13G44960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 5'ss of exon 7
GGAAGAACATGAATTAACTCAATGGGAGGCAATTATCTGGCTTGCTATCTTGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctatatcattttcagaatttcttgatcattaatttctattgt-tgtaccacta---gagcttct--attctcgtggattgt-tgaatttgagcctttatat
 ||    |  ||| ||||||||||||| ||||||| ||||||||||||  | ||   |||||| ||| || | |||||||||||||| || || ||| ||||| |        ||||| ||   || || ||  |   || ||||  | |||  |  ||   |||| | |  |   |  |   | |  |   || ||||    |   
AGACATTCCAGAACTAACTCAATGGGAAGCAATTAGCTGGCTTGCTATTCTCACTCTATGGGTGTCTGTACTCTCTGGATACCTTGTTGATGCTATAGAGgtaaaatc----tattttgagttcttattcattgtggtttactatcatgtgtctctttacatgagcctttggaccattttcattcgcattggttggagcaaaaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208054117|gb|GD855360.1|GD855360
EST:     ACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAG                         GGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
genomic: ACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctat ... tctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
EST: gi|298184786|gb|HO029999.1|HO029999
EST:     TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAG                         GGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
genomic: TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctat ... tctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
EST: gi|192328536|gb|FK020768.1|FK020768
EST:     TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAG                         GGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
genomic: TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctat ... tctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG