1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAGAAGGAGTTTGAAATGGCTTTGCAAGATAGAGTCATGGAGGAAACGAAAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattgccatggttttcttgttatttgaggtcaatttttttatttttaattattactaaaactaatttcttgatatcattttag
species | Glycine max |
transcript | GLYMA13G43630.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTEST: gi|207799471|gb|GD769240.1|GD769240
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTEST: gi|298188653|gb|HO035346.1|HO035346
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTEST: gi|192301840|gb|FG997698.1|FG997698
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTEST: gi|298166695|gb|HO010134.1|HO010134
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTEST: gi|193440642|gb|FK404969.1|FK404969
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTEST: gi|8827941|gb|BE211671.1|BE211671
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
EST: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAG CTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
genomic: AAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattg ... atcattttagCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAAGGAGTTTGAAATGGCTTTGCAAGATAGAGTCATGGAGGAAACGAAAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattgccatggttttcttgttatttgaggtcaatttttttatttttaattattactaaaactaatttcttgatatcattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA