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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatgagcccaaaaattttggcattctctttagaccctgtcccatattttatttcttaaatttagtcatggtcacctgtcaagaaaaaaaatcatttttattttcccttttag

Basic information

species Glycine max
transcript GLYMA13G42890.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 5
AGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatgagcccaaaaattttggcattctctttagaccctgtcccatattttatttcttaaatttagtcatggtcacctgt-caagaaaaaaaatcatttttattttcccttttag-----------------------------------------
|||||| || |||||||||||| | | |||||||||||  || ||||| ||||||||||| ||||| |||||||| || || || || |||||  | ||||||||  |     |    |  || |   |  |       |  ||||   |   |||  |   |  |   ||    || |  |   |   |    |||   ||  | | |     || ||                                         
AGAATATACCTTGTATGGGAAACCAACCATTACAGAGATGTTGAGAGGACTTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGgtttgttaatgctctgttaggttcgaagtattgacatatctatgtcatgtgacttacattccagttcatgtatcagttatttccacgttatgctaaaattttggtgtctagtgcttgagcatttccaacagtttttcctgcatggttgcatgtactgcag

upper sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatgagcccaaaaattttggcattctct----ttagaccctgtcccatattttatttcttaaatttagtcatggtcacctgtcaagaaaaaaaatcatttttattttcccttttag
 ||||| ||| | ||||||||   ||  || ||||||  |||||||||||||||||| ||||| |||||||||||||||||||| || || ||| ||||||| |    |    | ||  |   |||  |  | |    | | | | |    || |  || ||    ||||  | |  || |||| |||  ||                              
GGAATATACTCTTTATGGGAAGGATACAATCACAGAGGTCTTAAGAGGGCTTACATTTCAAATTTCAGCCAACTCTTTCTTTCAGACTAACACTCATCAGgtatatggtaccactaagcaacatggtttcttttacactcaaaacattaatcacaacttgttg--aaaataaaatggtgttcac-tgtgtag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405629|gb|EV275443.1|EV275443
EST:     TTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAG                         GCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAAAGGGTGA
genomic: TTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatg ... tcccttttagGCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAA-GGGTGA
EST: gi|10234615|gb|BE803503.1|BE803503
EST:     TTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAG                         GCAGAGGTTTTATACAAGCTTATTAAAAGATTGTGCTGGAGTCAAGGGTGA
genomic: TTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatg ... tcccttttagGCAGAGGTTTTATACAAGCTTA-TAGAAGATTGTGCTGGAGTCAAGGGTGA
EST: gi|18040955|gb|BM309249.1|BM309249
EST:     TTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAG                         GCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGAC
genomic: TTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatg ... tcccttttagGCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGAC