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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttcttattttgtactttgccatagtctagcaaattttggttgaattgagaaccctctgggtattcagtgtcaatcttgcatatattatt...

Basic information

species Glycine max
transcript GLYMA13G42800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttcttattttgtactttgccatagtctagcaaattttggttgaattgag--aaccctctgggtattcag-tgtcaatcttgcatatattatt
|| |  | ||| ||||| ||| | | |||  | ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || |||||||||||||  || |  |  ||      ||   |||    ||| ||    ||||   |  |  | ||  ||   |   | | ||||| | |  |  |||  |||   |  
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtata-tgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagtatgaca--

upper sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttc--ttattttgtactttgccatagtctagcaaattttggttgaattgagaaccctctgggtattcagtgtcaatcttgcatatattatt-
|||| |||||||||  | |||   || ||  |||| || ||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||||  ||| |   |  ||    |  |  ||||     |||  | |        ||  ||      || |     ||||| ||       |  |  |  | |  
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagc---aactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga

upper sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 6
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttcttattttgtactttgccatagtctagcaaattttggt-tgaattgagaaccctctgg--gtattcagtgtcaatcttgcatatattatt
|| |  ||||| || || | | | || ||  ||||||| ||||||||||| |||||||||||||| || || ||||| || || |||| |||||| |   |||||| ||  || | | |     ||        | | ||| | |   || |  ||  | | |  || ||     | ||| || |  || | |  
GTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCCCATGCTCATGATTACCATATTAATTCAATCTCCAATAGCAGgtaatc--gttttcctaagttttccctcaggttatatgttttactcttgatatctctttaacacgtttttgctgtctttctccttaatttttc-catctcagg

upper sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgta-ttttagttttcttattttgtactttgc-catagtctagcaaattttggttgaat---tgagaaccctctgggtattcagtgtcaatcttgcatatattatt
|||   |||| ||| |||||| | || ||  |||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||||  ||  |     | || |||     | ||  ||| | ||||   || || ||  ||   ||   ||| | |   | |   | ||  |||||    |  ||   
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccatactttaattctcgcatataatgtagctg-ttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatg-acctt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207847156|gb|GD820803.1|GD820803
EST:     GCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAA
genomic: GCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|208327646|gb|GE119368.1|GE119368
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|7686354|gb|AW757002.1|AW757002
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|207758381|gb|GD727307.1|GD727307
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|208191779|gb|GD994625.1|GD994625
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|19936402|gb|BQ080848.1|BQ080848
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|207770869|gb|GD743421.1|GD743421
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|207752398|gb|GD725819.1|GD725819
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|207701978|gb|GD683852.1|GD683852
EST:     GCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAA
genomic: GCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
EST: gi|21887329|gb|BQ740542.1|BQ740542
EST:     GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG                         CGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA
genomic: GTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagt ... tatcttccagCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAA