1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatccgccacattattattaattgttgaaacattacttatattttatccaccttgatgtgcttgttaatagtgccactttaatttgatgttttgtgacatgcgttttcaacag
species | Glycine max |
transcript | GLYMA13G41580.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAG GGCCTCCGTGTTGGTATCAACTTAGCATTAGCCATTGCTCTGCACAATATCEST: gi|7029691|gb|AW459474.1|AW459474
genomic: GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
EST: GCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAG GGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATCEST: gi|192300198|gb|FG989320.1|FG989320
genomic: GCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
EST: GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAG GGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATCEST: gi|192300847|gb|FG991169.1|FG991169
genomic: GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
EST: AATGGCGGTGTTCCCTTGGATCCTTAAAG GGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
genomic: AATGGCGGTGTT-CCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatccgccacattattattaattgttgaaacattacttatattttatccaccttgatgtgcttgttaatagtgccactttaatttgatgttttgtgacatgcgttttcaacag
- - - - - - - - - - - - AAGGAA