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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttctgcaaagtacatttatgcacaactatcttttccatggtatcttaattttccttttgcttcttttgaccctaattatcccttattttcaaatcaactgtgtag

Basic information

species Glycine max
transcript GLYMA13G41460.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41460.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 6
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttctgcaaagtacatttatg-cacaactatcttttccatggtatcttaattttccttttgcttctt----ttgaccctaattatcccttattttcaaatcaactgtgtag---------------
|||| ||||||| |||||||||||   | |||||  |||| |||||||| ||||  |  ||||||||||||||||| || || ||||||||||| ||||||||    |||    |  ||||   |  | | | |||| |  |  |  ||   |  |    |   ||      |  |   ||  | ||   ||  |        | ||| | |               
TGGCTGGAGATGCAACCAACATAGTTTTGGATCCAATATTTATGTTTGTCTTCCAGTATGGTGTCAGTGGTGCAGCAATTGCTCATGTTATATCACAgtatgtagcacaattctctcttataatatcattgttttttacccgtgaagttggatgacaaactatgtccaaaagtatataatacctttcttctacctcttgtgatagtgtatggtggaaaattctgcag

upper sequence: GLYMA13G41460.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G870170_T02 (Zea mays), 5'ss of exon 6
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttc-tgcaaagtacatttatgc-acaactatcttttccatg-gtatcttaa---ttttccttttgcttcttttgaccctaattatcccttattttcaaatcaactgtgtag
|||| |||||||  | ||| ||||   | |||||  |||| |||||||| ||||  |  ||||| |||||||| |||||||| ||||||||||| ||||| || | | |    | | |||   | |     ||       ||    |||  ||   || |  || |  | || ||  |  |  | ||    |||  |  ||   | | || ||
TGGCTGGAGATGCGATCAATATAGTTTTGGATCCAATATTTATGTTTGTGTTCCAATATGGTGTTAGTGGTGCCGCCATCGCTCATGTTATATCACAgtacgtacataccttttgccttttccctatcgagatggaaggaatatacatccaaaagtttatgattcttgtgctcttatcttttgtgatagtgtatggtggaac--attctgcag

upper sequence: GLYMA13G41460.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 6
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgtt-ctgcaaagtacatttatgcacaactatcttttccatggtatcttaattttccttttgcttcttttgaccctaattatcccttattttcaaatcaactgtgtag
|||||||||| ||||| ||||||    |||| ||  |||| |||||||| ||||   |||||||| ||||||||||||| |||||||||||||||||||| ||| || |  | | ||  |    |     ||            | |   ||||  |||   ||  |    |       |     | |  ||   || | |  | |||
TGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttacttcctattgcagctcaaaagctaaattacagtggcatcacccctatttgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348710|gb|BM893242.1|BM893242
EST:     GTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCA                         GTACCTAATTTCAGTTATTCTCTTGTGGAGGTTGTTGGAACAAGTTGACCT
genomic: GTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttctg ... aactgtgtagGTACCTAATTTCAGTTATTCTCTTGTGGAGGTTGTTGGAACAAGTTGACCT