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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgtctatattttgttaacagtactattgttttggtgaaaacttgctcgccattatggtgattatatttttgaattttattgttctcacatatt...

Basic information

species Glycine max
transcript GLYMA13G41120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 5'ss of exon 5
CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgtctatattttgtta--acagtactattgttttggtgaaaacttgctcgccattatggtgattatatttttgaattttattgt-tctcacatatt------------------------------------------------------------------------
  || |||||  |||||  |||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||| | |    | ||   |  |  |||  || |||    || |     |    |   |    |  | |    || |  |  ||||  | | ||| |  | ||                                                                        
AGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAGgtattccttctaacatagagcaattacatcacgattagcatgttcccttcacatttatctgcctcataaaccaatatgggttttttcctatatctaatgtctttcttgaccgatgcctggtacctgattctgcaattctgttcattcgaattatttgaaatatgcatgacattag

upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 6
CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgtctatattt---tgttaacagtactattgttttg-------gtgaaaacttgctcgccattatgg-tgattatatttttgaattt--tattgttctcacatatt----------------------------------------------
  ||||||||| |||||   ||| | || ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||| |||||||   |   |||          |||| | |  ||| ||||        ||  | | |||||  |  || ||  |     |||| |||| ||   ||| | | ||| || ||                                              
AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatca-atgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtag

upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 5'ss of exon 6
CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgtctatattttgttaacagtactattgttttggtgaaaacttgctcgccattatggtgattatatttttgaattttattgttctcacatatt----
  ||| | ||||  ||||| ||| | |||||||| ||||| || |||||||||||||| || |||||||||||||| ||||||||||| || || ||| |  ||  |   | || || |   |   |||   ||    |  |  |    ||    | |    ||||| ||  |  | || ||   |    || |     
AAAAAGTGTCAAGCTGGGATAATATTGTTTTGGCTTATGAACCTGTTTGGGCCATTGGCACTGGAAAGGTTGCAACCCCTGCTCAGGCACAGGAAgtaagtctgggt---tgttattgaatttgtcatttcattaacaaggatctttatgctggaaagcatgttatagttcagt-tattgttaaaccggaatctctaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208180403|gb|GD977608.1|GD977608
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG                         GTTCATGCTGATTTAAGGAAATGGG
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGG
EST: gi|6071447|gb|AW100834.1|AW100834
EST:     TTTGNGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCATGCTCAAGAG                         GTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
EST: gi|18040397|gb|BM308691.1|BM308691
EST:     TTGGGCCATTGGAACAAGGAAGGGT-GCAACTCCTGCTCAGGCTCAAGAA                         GTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGA-GTT
genomic: TTGGGCCATTGGAACA-GGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
EST: gi|193542030|gb|FK494504.1|FK494504
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG                         GTTACAATGCTGATTTA
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTT-CA-TGCTGATTTA
EST: gi|10843979|gb|BF067325.1|BF067325
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCANGCTCAAGAG                         GTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGGTGAAGTT
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
EST: gi|192308239|gb|FK002751.1|FK002751
EST:     TTTGGACCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG                         GTTCATGCTGATT
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATT
EST: gi|208308523|gb|GE102923.1|GE102923
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG                         GTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
EST: gi|192300263|gb|FG987840.1|FG987840
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAG-CTCAAGAG                         GTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGT
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGT
EST: gi|151409950|gb|EV279758.1|EV279758
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG                         GTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTAAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTT
EST: gi|193508667|gb|FK465823.1|FK465823
EST:     TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG                         GTTCATGCTGATTTA
genomic: TTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgt ... tttggcctagGTTCATGCTGATTTA