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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt...

Basic information

species Glycine max
transcript GLYMA13G40960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt-------
|||| || || ||| | ||  ||||||||||||| ||||||||| | ||||| || || ||||| ||||||||||||||||| || || |||||      |||  |  || | ||  || |  || | ||     |||   |  | |||  | || ||| |  ||| |  | | ||    |||  |||  |        
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgt------ttgttaaacttcgttaatcaa--aactcgcaa---aatgctagctgatatatttttatgacttatgatc-atatatccttttcatctttctaatggcag

upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggcct--tttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt
|||| || |||||||| |||||||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||||||| || || |||||    |  || || | |   | | |      ||   | |  | ||||   ||    || ||| | || | | |||||   | |                  
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgt----tcgtgtgaatatagatatattctcatatcaccttcatataatcagaatcgttagttactgatctaatatgtttatgcag-----------------

upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgt-atagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt--
||||||| ||||| || ||||| ||||||||| |||| ||||| |||||||| || || ||||||||||| || ||| ||||||| |||||||| |   | || |   | | ||||||   |  |||  || |  | ||      |    | |||   |||||  | ||        |  ||   | ||      
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatt---tctctatctgatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406393|gb|EV276208.1|EV276208
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: gi|151404362|gb|EV274172.1|EV274172
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: gi|213590294|gb|DB963857.1|DB963857
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: gi|19052776|gb|BM731443.1|BM731443
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG