Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt...

Basic information

species Glycine max
transcript GLYMA13G40960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt-------
|||| || || ||| | || ||||||||||||| ||||||||| | ||||| || || ||||| ||||||||||||||||| || || ||||| ||| | || | || || | || | || ||| | | ||| | || ||| | ||| | | | || ||| ||| |
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgt------ttgttaaacttcgttaatcaa--aactcgcaa---aatgctagctgatatatttttatgacttatgatc-atatatccttttcatctttctaatggcag

upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggcct--tttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt
|||| || |||||||| |||||||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||||||| || || ||||| | || || | | | | | || | | | |||| || || ||| | || | | ||||| | |
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgt----tcgtgtgaatatagatatattctcatatcaccttcatataatcagaatcgttagttactgatctaatatgtttatgcag-----------------

upper sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgt-atagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt--
||||||| ||||| || ||||| ||||||||| |||| ||||| |||||||| || || ||||||||||| || ||| ||||||| |||||||| | | || | | | |||||| | ||| || | | || | | ||| ||||| | || | || | ||
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatt---tctctatctgatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406393|gb|EV276208.1|EV276208
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: gi|151404362|gb|EV274172.1|EV274172
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: gi|213590294|gb|DB963857.1|DB963857
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: gi|19052776|gb|BM731443.1|BM731443
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG