1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaacttataattactataactgcattctgttctttttgcctgcactcaaaacttcatttagtgtggttgtagaaaagaaaaatgttgaatctatca...
species | Glycine max |
transcript | GLYMA13G39210.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCEST: gi|4396312|gb|AI495309.1|AI495309
genomic: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTC
EST: TCCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCEST: gi|15813986|gb|BI786261.1|BI786261
genomic: TCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTC
EST: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCEST: gi|209726298|gb|BW659611.1|BW659611
genomic: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTC
EST: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCEST: gi|7924791|gb|AW830817.1|AW830817
genomic: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTC
EST: GTTT-CCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGGTGGGATCAGTGGTTTTCTGAGGCAGCCEST: gi|298165233|gb|HO011282.1|HO011282
genomic: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCC
EST: GTTCTCCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGCTGGGAEST: gi|19935096|gb|BQ080126.1|BQ080126
genomic: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGA
EST: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTG CTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCA
genomic: GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaactt ... ttcatgtcagCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCCAGACTAAATTTGCAAAAGTTGGAGTTGgtaagaacttataattactataactgcattctgttctttttgcctgcactcaaaacttcatttagtgtggttgtagaaaagaaaaatgttgaatctatca
- - - - - - - - - - - - TTGGAG
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