Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCTgtaagtcattttcttttgtctgcaattctgaagagatataatgtacataagatctccaatgatttcatcatgctagagcacagaattatggtgagaggtc...

Basic information

species Glycine max
transcript GLYMA13G38930.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38930.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 5
ACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCTgtaagtcattttctt--ttgtctgcaattctgaagagatataatgtacataagatctccaatgatttcatcatgctagagcacagaattatggtgagaggtc
||||| ||||| |||||||| ||||||||||| ||  ||||| ||||||| | |||| ||||||||| | || ||  || |||  |  ||| || | |  |    |   | | | ||    | |||  |     ||      |||  |  || |||   || 
ACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCTgtaagtcctctttttcattttcttgatctctcaaaataactccgattgctcatacctg-gcttattgtagggcactcctattcagt-tattgttgatgagtt