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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcattgctaatcatcacctttataacaaaaaagtagtttgtaaaagaagaaaggagggttaggttaaatgtttttactccctcacaaaatacagg...

Basic information

species Glycine max
transcript GLYMA13G36140.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36140.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 5
GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcattgctaatcatcacctttataacaaaaaagtagtttgtaaaagaagaaaggagggtta--ggttaaatgtttttactccctcacaaaatacagg
|| |||||||| ||||||||  |||||||||||||||| |||||  |  |||| || || ||| ||||  |||||   |||  ||  || |   ||||      |||    ||| | |  ||  |           ||  ||| |  |  ||| ||| |               
GCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgta-aacatatct--tctttctctttg-----aaatctcagtctattgaaccacctcaagtttctaatggtgatcttctttaacttcag-------------

upper sequence: GLYMA13G36140.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54590.1 (Arabidopsis thaliana), 5'ss of exon 5
----------------------------GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcattgctaatcatcacctttataacaaaaaagtagtttgtaaaagaagaaaggagggtta--ggttaaatgtttttactccctcacaaaatacagg
                            || |||||||| ||||||||  |||||||||||||||| |||||  |  |||| || || ||| ||||  |||||   |||  ||  || |   ||||      |||    ||| | |  ||  |           ||  ||| |  |  ||| ||| |               
AAACTCATGTTCTAATCAATTGTTCCAGGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgta-aacatatct--tctttctctttg-----aaatctcagtctattgaaccacctcaagtttctaatggtgatcttctttaacttcag-------------

upper sequence: GLYMA13G36140.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 5
GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatg--tcattgctaatcatcacct---------ttataacaaaaaagtagtttgtaaa-agaagaaaggagggttaggttaaatgtttttactccctcacaaaatacagg
|| |||||||| || || || || || |||||||| || || ||||| ||||||||||||||| |||| ||||||||  ||| |  | ||  | |  |         || | | ||| ||  |  |  |||  | ||||||  |    |   ||| |   | ||  ||| |             
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttatttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18709588|gb|BM522441.1|BM522441
EST:     GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG                         GTTGCTGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA
genomic: GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcatt ... aatcaaacagGTTGCTGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA
EST: gi|8286475|gb|BE024043.1|BE024043
EST:     GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG                         GTTGCTGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA
genomic: GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcatt ... aatcaaacagGTTGCTGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA