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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgctccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag

Basic information

species Glycine max
transcript GLYMA13G35610.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 6
CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgct--ccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag
|||||||||||||| |||||| || |||| |||||| ||||| || ||||| || |||||  | |||||||| || || || |||||||||||||| |  |||||  ||  |  |||  ||     | |  |||   ||| | |        | |||    || ||    |||| ||   |||| || ||     | || ||||  ||   |   |                                                        
CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcacttacagttttttttcccctgaaaaatagttaaaacttt------gcatgg-ggaatca----aatggaa---atttcttgca-----acttcattaggaactttagcacgc-----------------------------------------------------

upper sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 6
CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagt-gctccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag
|||||||||||||||||||||||| |||| |||||| ||||| |||||||| || ||||| ||||||||||| || || ||||| ||||| ||||| |  |||||  |||||||   || |          || |||    ||||    |     | ||      | ||  ||| ||  | || | | | |   | | | |   |  ||                                                              
CATGGAAGGTGAAACCATGAGGGTGATGTATGAGCCATGGTTCGTGAAGTACAAAGTTGACGTTGTGTTTGCAGGACATGTCCACGCCTACGAACGCACAgtaagcagctccatactatca----------atttcttctgttgcaaatggttgggttattttttccactctgctatggacttctgagagttatactaagtaggatgtcg-------------------------------------------------------------

upper sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgctccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag
||||||||||||||| ||||||||||||| |||| |||||||||| ||||| || || ||||| || ||||| ||||| ||||| ||||| ||| ||   |||||  |   |  |  |  |     |||  ||| |||     ||   || | | | ||| | |    | ||  | |                                                                                             
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaa----actatagatactaagaaatctaagctattgtgaaaccag-----------------------------------------------------------------------------------------

upper sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 6
CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgc--tccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag
 |||||||| ||||||||||| || ||||||||| | ||||||||  |||| || ||||||||||||||||||||||| || || || || ||| ||  |||||||||  | |||     ||  | |  | |   |  || ||     ||     | ||     | |      |||  |  ||||| | |      |||  ||| ||||||                                                             
TATGGAAGGGGAAACCATGAGAGTCATGTTTGAGTCATGGTTTGTAGAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCACGCATACGAAAGATCTgtaagtgcacttcatcctcctatatattgtaaggtttcaaaat-----ggtgttttcatcggttctctgtttagca--aggtttttgaaaac----atttcttaaaaatca-------------------------------------------------------------