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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgtaatctctaatactgcaactcttggtatgattttgttttagtggtggtcaaatctaataattgtgatggtttacag

Basic information

species Glycine max
transcript GLYMA13G35580.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 6
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgtaatctctaat---actgcaactcttgg----tatgattttgttttagtggtgg-tcaaatctaataattgtgatggtttacag-------------------------------------------------------------------------------
 |  || ||||| || ||    |||||||| |||||||| ||| | |||||||| ||  ||||||| || || ||||| || |||||||||||||| |||||    | |  |   |   ||||| ||||    | | ||  |  || | | ||   |  ||  | | | |  | |    ||  ||                                                                               
CTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGgtgtgttgtgctttgatctcaactgttggctgctgtaataatagttgatttgtcacttgaacatcaaattcatcagctcttttagaaacacaaccgtcaatataacctttggattgttgatctgtattagtagctcatgtggatatacttctcttcttctgcag

upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G815894_T03 (Zea mays), 5'ss of exon 6
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgta-atctctaatactgcaactcttggtatgat-tttgt----tttagtggtggtcaaatc--taataattgtgatggtttacag-----------------------------------------------------------------------------------------
 || || || || || ||    |||||||| |||||||| ||| | |||||||| ||| ||||||||||||| || || || |||||||||||||| |||||| || |||     |  |  || || | | || ||||     |||  | || || |  ||  ||||| |  | ||  |||                                                                                             
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATTAGGACTACAACTGGGAACCGTGTCTTTGGTGCCCTCAAGgtacatgtcttccttttgatgtcatgatgttatatttggggtgtttgtttgtagttagctcattaatagtaataataatttttttgcatgaacttgttgtacaaggcatcttttatggtgactggttttccatctctgtagttttttaacgtttgttgcattatgttgctgcag

upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgta-atctctaatactgcaactcttggtatgattttgttttagtggtg---gtcaaatctaataattgtgatggtttacag---------------------------------------------------------------------------------
 || || || || || ||    |||||||| |||||||| ||| | |||||||| ||| | |||||||||||||| || || |||||||||||||| |||||| || |||  |  |      | || ||| || ||| | |  | ||     |  |  | |  ||   | ||  |||                                                                                     
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag

upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G090738_T01 (Zea mays), 5'ss of exon 6
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgta---atctctaatactgcaactcttggtatgattttgttttagtggtggtcaaatctaataattgt-gatggtttacag----------------------
 || || || || || ||    |||||||| |||||||| ||| | ||||| || ||| |||||||||| || ||||| || |||||||||||||| ||||||     ||    ||     | |  | ||||   | || |  | |  |  |    | |  |  |||| | ||| |||                         
CTCTGTCGAGCCAGCGGAAGAGAGGAGGCCTTTCCGTGCCCTCTTAGATGTCGGCCTTATTAGGACTACTACTGGAAACCGTGTCTTTGGTGCCCTCAAGgtatattccttctttatcatgaatgattgtatacatatgatacattt-tccttgtgttt--tggttgtaggtggcttatcaagaaaacttttttatacgatct

upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 5'ss of exon 5
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgtaatctctaatactgcaactcttggtatga----ttttgttt-----tagtggtggtcaaat-ctaataattgtgatggtttacag-----------------------------
||| || || ||  | ||    ||||| || |||||||| || ||||||||||| ||| | ||||| ||||||||||| || || || ||||| ||||||||| |  ||  |    |   | ||| | |||    | || |||     |  |  ||  ||||| || ||| | |  ||  ||||                                
TTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtag

upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 5'ss of exon 6
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgtaatctctaatact-gcaactcttggta--tgattttgttttagtggtggtcaaatctaa-taattgtgatg-gtttacag------------------
 || || |||||  | || |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || || || || |||||||| || |||||| | | |  |||  ||  | ||  ||   | | ||| |||  ||   | | || ||    |  || |  ||   ||  |                   
CTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGgtattatattttacaagcctcgctcagttgctcactttttttgcgtacagttaaagtccgtctttttattttgcacttgaaataatatgactatacatct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471703|gb|CD413731.1|CD413731
EST:     TTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAG                         GGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCT
genomic: TTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgtaatctcta ... tggtttacagGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCT
EST: gi|31475642|gb|CD417670.1|CD417670
EST:     GAAATCGCGTCTTTGGTGCCCTTAAG                         GGAGCTCTGGATGGGGNTTTGGATATTCCTCACAGCGACAAGAGGTTTGCT
genomic: GAAATCGCGTCTTTGGTGCCCTTAAGgtaatctcta ... tggtttacagGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCT