Sequence
atgc intronic sequence ATGC exonic sequenceCCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaagcaaccccattgccattgaatttttcgtactttgaaacttcttttctcttgtctatatgtagttttgtagtcatggaattttcttttttgtttttacattagctttgtaattgacagcatttacatgttaattatacag
Basic information
species | Glycine max |
transcript | GLYMA13G34970.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaagcaaccccattgccattgaatttttcgtactttgaaacttcttttctcttgtctatatgtagttttgtagtcatggaattttcttttttgtttttacattagctttgtaattgacagcatttacatgttaattatacag
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AATCCGTTGGATGAAACATCAATCGCTTGTATCACACGCGATTTGCTTCATGCTGTTGAATATCTGCATAATGAGGGAAAGATCCACAGAGACATTAAAGgt-ttgtgtgcattgatagaagtattg--ttttttatttgttgaaatgtgttttaactgcttggtacagaa------aatc-----actttcttcctcttttgcag------------------------------------------
upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 6
CCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaagcaaccccattgccattgaatttttcgtactttgaaacttcttttctct-tgtctatatgtagttttgtagtcatggaattttcttttttgtttttacattagctttgtaattgacagcatttacatgttaattatacag
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AATCCATTGGATGAAATTTCAATTGCTTGTATTACGCGCGACCTACTTCATGCTGTTGAATATCTCCATGCTGAGGGAAAAATCCACAGAGATATTAAAGgtttt--------ctctact--tatatattttaacatcttatggcttttcatgatactgtgtgttctgatcgcttattgcatgactatttttttttcctatttttgcag----------------------------------------
upper sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 6
CCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaagcaac----cccattgccattgaatttttcgtactttgaaa------cttcttttctcttgtctatatgtagttttgtagtcatggaattttcttttttgtttttacattagctttgta-attgacagcatttacatgttaattatacag
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CAACCACTGGATGAAATGTCTATAGCTTGCATTTTACGTGATCTACTCCATGCAATTGAGTATCTCCATAATGAAGGAAAAATTCACAGAGATATCAAAGgtattgtcatcaaatggaccctttgttaactcaagtatctttgcttgaaatagtgtcttttgatttgctgtttttaataatttctctaatta--gagcttttctttcttcttgtaaactattttggtggaatgacaacattgatattataaatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209719593|gb|BW672074.1|BW672074EST: TGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAG CTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
genomic: TGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaag ... aattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaagcaaccccattgccattgaatttttcgtactttgaaacttcttttctcttgtctatatgtagttttgtagtcatggaattttcttttttgtttttacattagctttgtaattgacagcatttacatgttaattatacag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA