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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagataccaatttacttgagatttggatagatctttatatatccgatatggaagcaataaatacattctgaattctactcatgctaaatgcag

Basic information

species Glycine max
transcript GLYMA13G34570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34570.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G16900.1 (Arabidopsis thaliana), 5'ss of exon 6
---ATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagataccaatttacttgagatttggata-gatctttatatatccg-atatggaagcaataaatacattctgaattctactcat--gctaaatgcag--
   ||| || |||||||||||  ||||||| ||||||||||||| | ||||||| || |||||    || ||||   ||  |||  |   | |    ||||||||||| | |||| ||||   |  |  |  |  ||| | ||  | |||| | || |||   |   | |   |  || |   ||  ||  | | ||| |    
TATATACCCTCTTATTTGTGTCTCTGCTTCTGCTGTTATTGAGAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCT---GGTGACAgtaag-ttccaacttacaatatctcagtctctgatttatacctttccgcaaattgaaaagaagtagattgtacgattctcacatatctgtttaatacgcag

upper sequence: GLYMA13G34570.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g01410.t01 (Vitis vinifera), 5'ss of exon 6
ATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagata--ccaatttacttgagatttggatagatc--tttatatatccgatatggaagcaataaatacattctgaattctactcatgctaaatgcag
|||||||||| | |||||||||||||||||||| ||||||||||| || |||||||| ||   |  |||  ||||  ||| |  || | | || || |  || || |   || || | | |   |||||     | |  |||  |||     | |||         | |||||||    | | |   |||         
ATATCCACTTGTCTGTGTTGCTGCTTCAGCTGTCATTGAGAGCTTTCCAGATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttatcccatattcctataatttgctctaagccatttcaataaatattctggctcattgtcaaacattctttgct-tgcctgtgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208258962|gb|GE055395.1|GE055395
EST:     TCTTTTCCGTAGACAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: TCTTTTCCGTAG-CAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|19938576|gb|BQ081785.1|BQ081785
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGA
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGA
EST: gi|19053815|gb|BM732482.1|BM732482
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|51342060|gb|CO983327.1|CO983327
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|7926538|gb|AW832564.1|AW832564
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|208135749|gb|GD933682.1|GD933682
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATA
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATA
EST: gi|208163103|gb|GD961021.1|GD961021
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT