Sequence
atgc intronic sequence ATGC exonic sequenceTCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatacttttaaaatgatcatcgtggattgttaattactcttgaatcattttgctgatttcccttcttatttctgtag
Basic information
species | Glycine max |
transcript | GLYMA13G34560.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 7
TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatacttttaaaatgat-catcgtggattgttaattactcttgaatcattttgctgatttcccttcttatttctgtag
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TCCAAGAGTCACACCAGAGGTTACAAGGGACGTATGCCTGTTAGCTAGAATGATGGCTGCTAACTTATACTATGCACAGATAGAGGATCTGATGTTTGAGgtaaaa-ataa-taggttgtactatttaaaggatatatgctgtattgatgtttgatctcacacaaaatt-ttgaccacctgcag-----------
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 5
TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctc-tggcatacttttaaaatg-atcatcgtggattgttaattactcttgaatcattttgctgatttcccttcttatttctgtag
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TCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAGAATGATGGCTTCAAATTTATACTGCTCGCAAATTGAGGATCTCATGTTTGAGgtaagaattacttcatcccttatcttccacacatataaatcaattttattaaattctccaaattctggcag-------------------------
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 5
TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatacttttaaaatgatcatcgtggattgttaattactcttgaatcattttgctgatttcccttcttatttctgtag
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TCCAAGAGTCACGCCAGAGGTTACAAGGGATGTATGCTTGTTGGCTAGAATGATGGCTGCTAATTTGTATAATGCCCAGATAGAAGACCTGATGTTTGAGgtaaa----agtaaggacacatttttttaat-attgtagtga--tattagtctcacaagaattctttttatcgcatgcag--------------
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatacttttaaaatgat----catcgtggattgttaattactcttgaatcattttgctg-atttcccttcttatttctgtag--------------------------------------------------------
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CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730061|gb|BM525657.1|BM525657EST: TGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAG CTCTCTATGTGGCGCTGCAATGATGAACTACGCGTTCGTGCAGAAGAACTT
genomic: TGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccata ... atttctgtagCTCTCTATGTGGCGCTGCAATGATGAACTACGCGTTCGTGCAGAAGAACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatacttttaaaatgatcatcgtggattgttaattactcttgaatcattttgctgatttcccttcttatttctgtag
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