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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCCATTTTTCCCAATTATCCATCATGATATCGCTAATGAAATTCCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGGTAAgttatcccatcttttgttccattgcaatatggtttgcatcattgagttgtttttaagccattcttaag

Basic information

species Glycine max
transcript GLYMA13G31830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 6
----GGCCGCCATTTTTCCCAATTATCCATCATGATATCGCTAATGAAATTCCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGGTAAgttatcccatcttttgttccattgcaatatggt----ttgcatcattgagttgtttttaagccattcttaag-------------------------
    |||| |||||| | ||| | ||||||||||||||| | ||||| || || | ||| ||||||||| |||| |||||||||||| | |||||  | |||| | | ||  ||  |  | | |     |   || |    |||||     |    ||||| |   |||  |  |                          
AACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGgtatgct-tctgattgtcagattcccaaaatcttgatgctcttgcacttcggtaacgttttaactgcataatggacaagcattttagtcttctacaaagtt

upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 6
----GGCCGCCATTTTTCCCAATTATCCATCATGATATCGCTAATGAAATTCCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGGTAAgttatcccatcttttgttccattgcaatatggtttgcatcattgagttgtttttaagccattcttaag-----------------------------
    |||| || ||| | ||| | ||||||||||||||| | ||||| || || | ||| ||||||||| |||| |||||||||||| | || ||  | |||| | |  | |   || |      |    | |   ||  |     ||| |  | || ||     ||||                                
AATTGGCCTCCTTTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCGTCGTTTCTTGgtatgctgcctctgattct-caatgtcatgaaacctttcactctgatgaataatcttcaatattctcttttatttaatgttgcaatggacatgttttccat

upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 6
----GGCCGCCATTTTTCCCAATTATCCATCATGATATCGCTAATGAAATTCCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGGTAAgttatcccatc---------ttttgttccattgcaatatggtttgc--atcattgagttgtttttaagccattcttaag-----------------
    |||| ||||| ||||||||||||||||||||||| || |||||||| || |||||||| ||||  ||||||||||||||||||||  |||| ||||||| ||      ||           |||| |    |   || |  ||| |  |  ||| |  |  ||  | || | | |||                   
AATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTATGTTGCATTTACGACATTCTTAGgtatgtctcttaataagatagtgactttgatattcttatatttcttttactaaatattcaacttcttgcatgcaaattttatattcctctagattcagat