Sequence
atgc intronic sequence ATGC exonic sequenceTCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagctgcatgtctaggtagaaatagaaaat...
Basic information
species | Glycine max |
transcript | GLYMA13G31380.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 5'ss of exon 5
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagctgcatgtctaggtagaaatagaaaat
|||||||||||||| || ||||||||||||||||||||||| || ||||| || || || || || || || || ||||||||||| ||||| ||||||||| | | |||| | | | | || ||||| || ||| ||| | ||| | | | ||||
CCTTCCTCTTATTGTTGCCATTGATTTGCAACCAATGGCTCCGATAGAAGGCGTTATACAAGTTCAAGGGGACATCACTAATGCTCGAACAGCAGAAGTGgtacttttctcatatggatttggcttgct-gtattttctcccatggtttgtcttgctgca---actgatataattttgttactag---------------
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G083745_T03 (Zea mays), 5'ss of exon 5
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagc-tgcatgtctaggtagaaatagaaaat
||||||||| || || || ||||| |||||||| ||||| ||||| |||||||| || || |||||||| || || || |||||||||||||| || ||||| | | | || | || ||| ||||| | | | || | | |||| ||| || || || || | ||
TCTTCCTCTCATCGTCGCAATTGACTTGCAACCGATGGCCCCAATAGAAGGTGTTATACAAGTGCAGGGCGACATCACCAATGCTCGGACAGCAGACGTGgtgag----acaga-agtaaaagacgtgtagcttttttgttgttgccgcagttagctggctgtgactaactagtatggatttcctgtcag-----------
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattata------tatagcataa------tcaccttagttttttcatagattattttatttggaagatgtgttga-----acaagctgcatgtctaggtagaaatagaaaat
|||||||||||| ||||| || |||||||| || ||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||||||| | || | ||| ||||| || | ||| ||| | | ||| | || | |||||| | | | | | ||| | ||
TCTTCCTCTTATAGTAGCCATCGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTTCAAGGGGACATAACTAATGCTCGGACTGCTGAAGTGgtaaaatttctcgactcctatctcataaatttttctacatctctttcttcctctttaattatgcttcaagtttgtgtttgtttccatggcttaccttttccggtgttttttttcaag
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 5
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagctgcatgtctaggtagaaatagaaaat------
||||||||||||||| || ||||||||||| || ||||||||||||||||| || || || || |||||||||||||| |||||||| ||||||||| |||| || || | | | | | || || | ||| || ||| | | | | | | | | | || | | || | || ||
TCTTCCTCTTATTGTGGCGATTGATTTGCAGCCCATGGCTCCAATTGAAGGGGTGATTCAAGTCCAGGGTGATATAACAAATGCTCGTACAGCTGAACTGgt-tagtcaatttctccccccaagtcattg--ttatccattatttgtttgacagtgtaaagatat---aaatggcgcttctttaaaattatgtaactgatttaata
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ27494 (Selaginella moellendorffii), 5'ss of exon 5
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatata-----ttatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagctgcatgtctaggtagaaatagaaaat
| ||||||||||| ||||||||| |||| |||||||| || ||||| |||||| | || | || || || || |||| ||| || || || || |||| || | | ||| |||| || ||||| || ||||| || | | | | ||| | | |
CCGACCTCTTATTGTGGCTATTGATCTGCAGCCAATGGCCCCTATTGATGGTGTCGTTCAAATTCAAGGAGACATCACTAGTGCACGAACTGCCGAGTTGgttagtagaatctcaagtattatgtaatgtttgaagctttttttta----atttttttccgtggtttttttgtcctcgtag------------------------
upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ07303 (Selaginella moellendorffii), 5'ss of exon 5
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagctgcatgtctaggtagaaatagaaaat
|| ||||||||||| |||||||||||||| |||||||| || ||||| |||||| | || | || || || || |||| ||| || || || || |||| || || | || || || | |||| | || || | ||| | | | ||| | | |
TCGACCTCTTATTGTGGCTATTGATTTGCAGCCAATGGCCCCTATTGATGGTGTCGTTCAAATTCAAGGAGACATCACTAGTGCACGAACTGCCGAGTTGgttggtagaatctcaagtattatgtaat--gtttgaagctctttttttctttttttgtggttttttgtcctcgtag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151401979|gb|EV271792.1|EV271792EST: GTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTG GTCATTAGACATTTTGATGGTTGCAAG-CTGACCTGGTTGTGTGTGATG-T
genomic: GTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatatta ... atttgttcagGTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTCCTCTTATTGTAGCTATTGATTTGCAACCAATGGCTCCAATTGAAGGTGTCATCCAGGTGCAGGGTGATATAACTAATGCTCGGACAGCTGAAGTGgtatatattatatatagcataatcaccttagttttttcatagattattttatttggaagatgtgttgaacaagctgcatgtctaggtagaaatagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataga