Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATGAAAGCAAGGATACACTTCAGCAGCAGATAGTGTATTCATTTGGTGACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagctttttcttattcaattcatttttaaccaatgaaattattggttatgaaaaatgctgttttttaacatttcaacctcacag

Basic information

species Glycine max
transcript GLYMA13G29120.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193480328|gb|FK444662.1|FK444662
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208221941|gb|GE017719.1|GE017719
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTT-GTTAGAGTAAGATG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATG
EST: gi|193567370|gb|FK525177.1|FK525177
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|193451390|gb|FK421352.1|FK421352
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGCAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208199507|gb|GD998194.1|GD998194
EST:     ACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATTCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: ACCACTATTATTTCAGAAAAGAACTCAGGATATTGAA-TCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|5677979|gb|AI939109.1|AI939109
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTNTGGTAGAGTAAGATGGCAAGGCT
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCT
EST: gi|192316411|gb|FK008172.1|FK008172
EST:     GACCACTATTATTTCATAAAAGAACTCAG-ATATTGAATCTCCTTACAGG                         -TATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGG
EST: gi|192299154|gb|FG990440.1|FG990440
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGG
EST: gi|207731132|gb|GD706577.1|GD706577
EST:     ACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: ACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|207689240|gb|GD670807.1|GD670807
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTT
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTT
EST: gi|20813684|gb|BQ298162.1|BQ298162
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|193539886|gb|FK493872.1|FK493872
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208341228|gb|GE135060.1|GE135060
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|193466999|gb|FK430796.1|FK430796
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208251638|gb|GE049207.1|GE049207
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|207842011|gb|GD816331.1|GD816331
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208258712|gb|GE054179.1|GE054179
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|209715423|gb|BW682128.1|BW682128
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|193325183|gb|FK290635.1|FK290635
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208221348|gb|GE019016.1|GE019016
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|207700872|gb|GD682761.1|GD682761
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|10253538|gb|BE821304.1|BE821304
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|213600183|gb|DB976058.1|DB976058
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTAAGATGGCAAGGCTTTGG
EST: gi|208070657|gb|GD869192.1|GD869192
EST:     GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGG                         GTATATCTTTCTACTTGATAATTTTGGTAGAGTA
genomic: GACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagct ... aacctcacagGTATATCTTTCTACTTGATAATTTTGGTAGAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCATGAAAGCAAGGATACACTTCAGCAGCAGATAGTGTATTCATTTGGTGACCACTATTATTTCAGAAAAGAACTCAGGATATTGAATCTCCTTACAGGgttataagctttttcttattcaattcatttttaaccaatgaaattattggttatgaaaaatgctgttttttaacatttcaacctcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC