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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGgtaagaccatcttttctgggttgaattattgtggcaaaggttacaattgatgcttaatttgaactgtttttcctaatggttttgacttgctgcag

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGgtaagaccatcttttctgggttgaattattgtggcaaaggttacaattgatgcttaatttgaactgtttttcctaatggttttgacttgctgcag
 |||||||||||||| || ||||| || ||||||||||| ||||| || ||||||||| | || |||||  | || ||||| || || || || ||||| |||||  |||  |  ||   ||  |||    ||  || |||| || || ||    |  | | |   || |     ||   ||| |  |  |||||
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaag-tcataatagctc--ttacatt----tg--aatggttgca-tttatatgcacctggcaggattctg--agatatattttaaataatgcag

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGgtaagaccatcttttctgggttgaattattgtggcaaaggttacaattgatgcttaatttgaactgtttttcctaatggttttgacttgctgcag
||||||||||||||| || ||||| ||||||||||| || ||||| || ||||||||| | || |||||  | ||||| ||||| || ||||| || ||||||||        |  || | ||   |    |  || |  ||    |  | | |||        |    |    ||||  |   |  || |||||
GGTTGCTCCAAAATCAACACTTGGTAATTGGATGAACGAAATTCGCCGGTTTTGTCCTGTCCTACGTGCTGTGAAGTTCCTTGGTAATCCTGAGGAGAGGgtaag--------tcatgagctgt-ctgccatttcagaatttcatgtaaacgtttatcccaggat----tctgaaatgtctgctaactgatgcag

upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGgtaagaccatcttttctgggttgaattattgtggcaaaggttacaattgatgcttaatttgaactgtttttcctaatggttttgacttgctgcag
 ||||| |||||||| |||||||| || ||||||||||| ||||| || ||||||||  |||| |||||  | ||||||||||| || ||||||||||||||       | |  |   ||      | |    | ||   ||    ||  |      |||  ||||   ||    |    || | ||  ||||||
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtg------tgtcattcaggccctgctttcagagtaattcttttt-ttatttacagttttccactgcactttgctaacacttcgtct--ctgcag