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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGAGATCGTTCGGGGCACCAGCAGTACTTCTCTCCTTGGCCATGCAAGGCATCTTTCGAGGGTTCAAGGATACAACAACTCCTTTATATGTCATCGgttggttcaaattatccatttgtttataatgaagtatattttgagagataaagtgtaaattaaagcatgttttcccttattaacttggtttatttgtttctttggttttattatatag

Basic information

species Glycine max
transcript GLYMA13G27300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G27300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 6
AGATTGAGATCGTTCGGGGCACCAGCAGTACTTCTCTCCTTGGCCATGCAAGGCATCTTTCGAGGGTTCAAGGATACAACAACTCCTTTATATGTCATCGgttggttcaaattatccatttgtttataatgaagtatattttgagagataaagtgtaaattaaagcatgttttcccttattaacttggtttatttgtttctttggttttattatatag
| ||||||| |  |||| || || || || |||||||||||||||||||||||  | |||||||||||||||||||| | |||||| ||||||| ||  |||  ||  |  |||   ||||  || |  ||   |    |||    |    | | |  ||   | ||    ||   |||     ||     ||    ||  | |              
ACATTGAGAGCTCTCGGAGCTCCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGGGTTTTTCGAGGGTTCAAGGATACCAAAACTCCCTTATATGCCACTGgtgagtagacctta---atttccttctt-tgttatcctcttttgttgtcttactctgtatctcatcagtacttatgttagggctttaacccatcccattgatag--------------

upper sequence: GLYMA13G27300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 5
AGATTGAGATCGTTCGGGGCACCAGCAGTACTTCTCTCCTTGGCCATGCAAGGCATCTTTCGAGGGTTCAAGGATACAACAACTCCTTTATATGTCATCGgttgg-------ttcaaattatccatttgtttataatg---aagtatatt-ttgagagataaagtgtaaattaaagcatgttttccctta-ttaacttggtttatttgtttctttggttttattatatag------------
| ||| |||||  | || || || || || |||||||| || |||||||||||  | ||||| || || |||||||||| |||||||||||| | ||  |||  |       ||    ||| |  |||  || |  |    |     ||| ||     | |   | ||||     |   | || |   ||   || |  | | ||||  |   ||   |||   || |              
ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtgagcaatagcttttggttacctttttccttttcctcctcattcgcattattcttcaacattttttaaaccttggtccgattacttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag