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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGTTTCACTCTTGTGAGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcacagctggcatattcttttgtagtcattttgttgtctcttaacttttttgatattttatcttaaatatgcag

Basic information

species Glycine max
transcript GLYMA13G24260.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24260.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGTTTCACTCTTGTGAGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcacagctggcat--attcttttgtagtca----------ttttgttgtctcttaactttt--ttgatatttt---atcttaaat---atgcag
 || ||||||||||| ||| | || |||||||| ||||||||||| |||||| | ||| |||| || ||||||||||| |||||||| || ||||| || || |||| |  ||    |||   ||  |||  |||||  | |          | | ||| | |  |  | | |  ||| | |  |   |||||   |   ||||||
CCGGGATTCCATTCGAGCTCTTTTTCCAGACAGAGAATGTTTCACCCTTGTGCGGCCTCTGAATAATGAAAATGATCTCCAGCGACTAGATCAGATTTCGgtcagtatctcatgtatgctattatttatttatttgtgtttaagaacccaattctagtttttttctcccctctcattggtgtactgagatcttgggttgtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207755780|gb|GD727911.1|GD727911
EST:     TGAGACCTTTGAACAACGAAAATGATCTACGGCGACTGGACCAGATATCA                         ATGGATAAATTAAGAACTGGTATTTTCGAGAGGGCCTTGATTCTTTGACAA
genomic: TGAGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacc ... aaatatgcagATGGATAAATTAAGAACTGG-A-TTTCGAGAGGGCCTTGATTCTTTGACAA