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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAGTTCAAGTGGCATCCTTGCTACACTTTCTCGCTTGTCAGATTTATTAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctttaaacttttttacttcaacgttttgtacagttccattctatttaaactgatgccgctgaacctcatgaacag

Basic information

species Glycine max
transcript GLYMA13G23560.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696252|gb|FK639708.1|FK639708
EST:     AACAATTATGGCGTCATCTTGAATTGAGAACAAAG                         GTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
genomic: AACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
EST: gi|208285383|gb|GE086057.1|GE086057
EST:     TAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAG                         GTTAAACCACAATTCTA
genomic: TAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAATTCTA
EST: gi|208191140|gb|GD991928.1|GD991928
EST:     TAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAG                         GTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
genomic: TAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
EST: gi|193484762|gb|FK452042.1|FK452042
EST:     AACAATTATGGCGTCATCTTGAATTGAGAACAAAG                         GTTAAACCACAATTCTTATGCATTCCGATGGATTACACTCCTACTCACGCA
genomic: AACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAATTC-TATGCATTCCGATGGATTACACTCCTACTCACGCA
EST: gi|208170954|gb|GD972387.1|GD972387
EST:     TGAGAACAAAG                         GTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
genomic: TGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
EST: gi|193533653|gb|FK489410.1|FK489410
EST:     TAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAG                         GTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
genomic: TAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAATTCTATGCATTCCGATGGATTACACTCCTACTCACGCAA
EST: gi|207767131|gb|GD739207.1|GD739207
EST:     TGAGAACAAAG                         GTTAAACCTACTAATTCTATGTCATTCCGATGGATTACACTCCTACTCACG
genomic: TGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACC-AC-AATTCTATG-CATTCCGATGGATTACACTCCTACTCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAATAGTTCAAGTGGCATCCTTGCTACACTTTCTCGCTTGTCAGATTTATTAGAAGTAAATGATGAACAATTATGGCGTCATCTTGAATTGAGAACAAAGgtagaacctttaaacttttttacttcaacgttttgtacagttccattctatttaaactgatgccgctgaacctcatgaacag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT