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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttattttcaaaatattttctttctgttcttattgttataattttgtattactaataaatacaaatagaagggcagataaattactctttgttga...

Basic information

species Glycine max
transcript GLYMA13G20980.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttattttcaaaatattttctttctgttcttattgttataattttgtattactaataaatacaaatagaagggcagataaattactctttgttga---
|| | ||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||| |  |||||  | ||||| || ||||| ||| ||||| | |||| ||  |||||||     ||    ||    |||| |    |    | |||| | |||     ||||     |        | | ||   | | |  | |   
CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttct---catgcaattatcattctaagatatggtttgttgtgtaactgcattatacttgctgccaaatcaacatatctttttgttctaaatt

upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G09920.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttattttcaaaatattttctttctgttcttattgttataattttgtattactaa---taaatacaaatagaagggcagataaattactctttgttga
|| | |||||  | || || || || ||||| |  ||||||||||| |||||||||||| |||| | ||||||  | |||||||||||   |||| ||| |||    | | | ||  |  || |  |    |   ||   |||| | |   |||| |  |   ||||      |     |     ||||              
CTGCAGACAAAGTCGAGATAGACGAGAACACGATACTTAAAGATTTAGATCTGAACTACAGCTTCTTCTTGGAGACTTCTTGGCGGGAAGGTTTACTGAGgtattactctctccaggaccttcttgtaagatatatacatttatcaatccatattccgcagtttaaaatttcttttcttgctgtgtaaacag-----------

upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttattttcaaaatattttctttctgttcttattgttataattttgtattactaataaat-acaaatagaagggcagataaattactctttgttga-
|| | |||||| | ||||||||||| ||||| || || |||||| ||||||| || ||| ||||||| |||||||| |||||||| ||  || |||||| ||||| | |   |  | |   | |  |   |||   |||   ||| |||| |     | | | || |   ||  |         ||  | |  |      | 
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaag-tcacagttgataagctgttatctcgttgccatttacata-ttttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193634667|gb|FK584330.1|FK584330
EST:     CTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAA                         GCAGATTGAGATTGACAGCAAGTTCTTGGAATTACAACAGATAATGG
genomic: CTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttat ... ctttgtgcagGCAGATTGAGATTGACAGCAAGTTCTTGGAATTACAACAGATAATGG
EST: gi|193557647|gb|FK511960.1|FK511960
EST:     GGCGGGAGTCTTTATTGAA                         GCAGATTGAGATTGACAGCAAGTTCTTGGAATTACAACAGATAATGGATTA
genomic: GGCGGGAGTCTTTATTGAAgtaaggttat ... ctttgtgcagGCAGATTGAGATTGACAGCAAGTTCTTGGAATTACAACAGATAATGGATTA
EST: gi|5760794|gb|AI966157.1|AI966157
EST:     CTTGGAACCATCTTGGCGGGAGTCTTTATTGAA                         GCAGATTGAGATTGACAGCAAGTTCTTGGAATTACAACAGATAATGGATTA
genomic: CTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttat ... ctttgtgcagGCAGATTGAGATTGACAGCAAGTTCTTGGAATTACAACAGATAATGGATTA