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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAACTATTATGAAATCGACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgatcaaactttccttgactgttttattctacttattatatgactcaataataattatattttatacttctttttaatagtatacttcttcagcttaacataatacttgattgcaaagcaattatttgaagtcttctatttgattgcatctaaatatag

Basic information

species Glycine max
transcript GLYMA13G20780.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708530|gb|BW668141.1|BW668141
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|209710379|gb|BW681278.1|BW681278
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGC
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGC
EST: gi|13311384|gb|BG405035.1|BG405035
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGC
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGC
EST: gi|10845490|gb|BF071116.1|BF071116
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|192324906|gb|FK016092.1|FK016092
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|213598835|gb|DB968306.1|DB968306
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|209711575|gb|BW676820.1|BW676820
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|193667347|gb|FK609753.1|FK609753
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCGAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|151405346|gb|EV275160.1|EV275160
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|207703119|gb|GD684897.1|GD684897
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|151404672|gb|EV274486.1|EV274486
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|11687342|gb|BF594982.1|BF594982
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|213611486|gb|DB959196.1|DB959196
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|9987590|gb|BE661698.1|BE661698
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|213597865|gb|DB958246.1|DB958246
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|151405163|gb|EV274977.1|EV274977
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|19937792|gb|BQ081423.1|BQ081423
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|12773014|gb|BG237941.1|BG237941
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|14126129|gb|BG790567.1|BG790567
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|308098710|gb|HO760451.1|HO760451
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|15199748|gb|BI423990.1|BI423990
EST:     GTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|213591667|gb|DB969767.1|DB969767
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
EST: gi|213587888|gb|DB959712.1|DB959712
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATT
EST: gi|213605470|gb|DB964609.1|DB964609
EST:     GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAG                         GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT
genomic: GACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgat ... ctaaatatagGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTAACTATTATGAAATCGACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGgtcagatgatcaaactttccttgactgttttattctacttattatatgactcaataataattatattttatacttctttttaatagtatacttcttcagcttaacataatacttgattgcaaagcaattatttgaagtcttctatttgattgcatctaaatatag

- - - - - - - - - - - - - - - - - - - - - GCTGTT