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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGCCTGCTGGCAAGACCATTGCTTTGGTTGGAAGCAGTGGATCAGGTAAAAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGATCCTTCTTCAGgtaaaactgtgaactcattcagatgtctttgaaaatcaacttgtggtagttactagttagtcatgatctgattctgaccatgtgatttttgttactaacttcaatattgtgcag

Basic information

species Glycine max
transcript GLYMA13G20530.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20530.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 5'ss of exon 6
AATGTGCCTGCTGGCAAGACCATTGCTTTGGTTGGAAGCAGTGGATCAGGTAAAAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGATCCTTCTTCAGgtaaaactgtgaactcattcagatgtctttgaaaatcaacttgtggtagttactagttagtcatgatctgattctgaccatgtgatttttgttactaacttcaatattgtgcag
  ||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| || || || || ||| | || || || ||    |||||| ||      | || |   | ||    ||  |  ||||  |||  |  |      || || ||  | | |||   ||  ||| ||  |   | |                   
TCTGTTCCTGCTGGGAAGACCATTGCTTTGGTTGGGAGCAGTGGTTCAGGAAAAAGCACAGTCGTTTCGCTTATAGAGCGGTTTTACGACCCGAACTCAGgttaa----caatctta---acattctgttacatttcaagctgttttgttcgagcatt-gttat--tttaattaacacggtgttatcgtctctgcag-----------------

upper sequence: GLYMA13G20530.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 6
AATGTGCCTGCTGGCAAGACCATTGCTTTGGTTGGAAGCAGTGGATCAGGTAAAAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGATCCTTCTTCAGgtaaaactgtgaactcattcagatgtctttgaaaatcaacttgtggtagttactagttagtcatgatctgattctgaccatgtgattttt-gttactaacttcaatattgtgcag
|| || || || || |||||||| ||  | || ||||||||||| || || || ||||| || || || |||||||||||||||||||||||  | ||||||||||     | | ||   | || || ||     | | |   | ||| | |||   |   ||  || |  || | |  |  | |||| | ||   | | || |||         
AACGTCCCAGCCGGAAAGACCATCGCCCTTGTAGGAAGCAGTGGCTCTGGAAAGAGCACTGTGGTCTCTCTCATTGAGAGATTCTATGATCCCACCTCAGgtaaaa-----accacacaaaaatttcattctccgtgatccaatagtactaactcaatttgcaaaat-tactttttataaaattatttctagtgggtgaatttaat---------