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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAGgtatttaaacaaccaagtttttttatccaggacaatttatctccaatattaaaattattctgtgcttttgaagtatttgtatcaaggaatcaacctatga...

Basic information

species Glycine max
transcript GLYMA13G19730.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19730.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 5
GAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAGgtatttaaacaac-caagtttttttatccag-gacaatttatctccaat-attaaaattattctgtgcttttgaagtatttgtatcaaggaatcaacctatga
|| |||||||| || ||||| ||||| ||||| || |||||||| |||||||||||||| ||||  ||  | || || || |||||||| ||       | |  || ||   ||   | |   |||  |||    |  ||   | |    |   |  |   |  ||    | | | |  | ||  ||  |
GAGAATGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAGGCATATCTAACTAGAAGTTTTCTACTCAATCTCAAACAGgtgttcttttttcacttgtcttaagattaggtggtcattgttctttggttgttttgaatgaattaaacaatgagatgat---gacccatggttgaagttaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999753|gb|BI320575.1|BI320575
EST:     CAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAG                         GATGGAAAAACCTTACCAAATGGACCTGTTGTTATATCACCTGATGGATTA
genomic: CAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAGgtatttaaac ... gtgcttgcagGATGGAAAAACCTTACCAAATGGACCTGTGGTTATCTCACCTGATGGATTA
EST: gi|13479791|gb|BG509134.1|BG509134
EST:     CAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAG                         GATGGAAAAACCTTACCAAATGGACCTGTGGTTATCTCACCTGATGGATTA
genomic: CAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAGgtatttaaac ... gtgcttgcagGATGGAAAAACCTTACCAAATGGACCTGTGGTTATCTCACCTGATGGATTA
EST: gi|21994257|gb|BQ785785.1|BQ785785
EST:     CAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAG                         GATGGAAAAACCTTACCAAATGGACCTGTGGTTATCTCACCTGATGGATTA
genomic: CAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAACAGgtatttaaac ... gtgcttgcagGATGGAAAAACCTTACCAAATGGACCTGTGGTTATCTCACCTGATGGATTA