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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcag

Basic information

species Glycine max
transcript GLYMA13G19500.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 6
GAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcag
||||| ||| | || || ||||| || || || || || ||||||||||||||||||||||| ||||| |      ||||||    ||    ||  | || |     || |     || |  | | ||| | |||  | | || | | | |  | |                                                                       
GAGCCCGTTATACCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGgtttggctt-cattccaacatttacaaagtccagcgaaatgctattctgatccccatgtttctat-tctgaccccatgtttgtttgaacag----------------------------------------------------------------------

upper sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctct-ctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcag
|| || ||  | || || ||||||||||||||||||||||||||||| ||||| ||||||||||||||    |||| ||||    |       |    ||  | | |     |  |      |    ||     |||| |||   |  |||                                                                             
GAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTATTGGTCTGATGCCAATGATTGATCAGgt----tagatattcaacgtacttgtcatattagtacttataaaagtaacagagattgaaactagaagctctttctgcttgaatag----------------------------------------------------------------------------

upper sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 6
GAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcag
|| ||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||| |  | | ||  |           |||  | |    ||||| |  |  ||      |  |   |   |||  |  |  ||  | | |                                                                       
GAACCAGTTCTTCCAGGATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtagaa-aaagatgac-----------aagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaacacag----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184004|gb|HO029217.1|HO029217
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCC
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCC
EST: gi|192330021|gb|FK020837.1|FK020837
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|19346407|gb|BM891287.1|BM891287
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|37996937|gb|CF808526.1|CF808526
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|6133848|gb|AW132241.1|AW132241
EST:     GTTGCTTTCTTCGGGCCANAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|9565429|gb|BE474938.1|BE474938
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAC                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGCGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|7587913|gb|AW703719.1|AW703719
EST:     GTTGCTATCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAA                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|208302025|gb|GE097505.1|GE097505
EST:     TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192324146|gb|FK017877.1|FK017877
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|213593665|gb|DB971687.1|DB971687
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|209719745|gb|BW672120.1|BW672120
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|17154018|gb|BM143951.1|BM143951
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGGGAGAAAGATGACCAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT