1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGACAAAGATGTTTGGGTTATGAATGTGGTGCCAGAAAATGGACCAAACACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTGgtatgactcttattcttatctttacaaaagaaattatcttcggtaggctattaacagacaattcctgtttaatttattgcttcacttttttttaatgctc...
species | Glycine max |
transcript | GLYMA13G18630.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTG GTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATGEST: gi|9564079|gb|BE473588.1|BE473588
genomic: ACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTGgtatgactct ... aatgtgacagGTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATG
EST: AACAGTTCACAACTG GTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATGEST: gi|21888797|gb|BQ742010.1|BQ742010
genomic: AACAGTTCACAACTGgtatgactct ... aatgtgacagGTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATG
EST: AGGGCTGTTAGGAACAGTTCACAACTG GTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATGEST: gi|7042113|gb|AW472007.1|AW472007
genomic: AGGGCTGTTAGGAACAGTTCACAACTGgtatgactct ... aatgtgacagGTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATG
EST: ACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTG GTGTGAAGCATTATCGACCTACCCTCGTACTTATGATTTGCTCCATGCATG
genomic: ACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTGgtatgactct ... aatgtgacagGTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATTTGCTCCATGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACAAAGATGTTTGGGTTATGAATGTGGTGCCAGAAAATGGACCAAACACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTGgtatgactcttattcttatctttacaaaagaaattatcttcggtaggctattaacagacaattcctgtttaatttattgcttcacttttttttaatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa